BAC Information

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BAC

Clone NameMSMg01-482A11
Chromosome5 (Build37)
Map Location 113,745,696 - 113,746,348
singlet/doubletsinglet
Overlap genenone
Upstream geneTfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464, Myo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2
Downstream geneAym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482A11.T7 (MSMg01no482_a11.b1)MSMg01-482A11.TJ (MSMg01no482_a11.g1)
ACCAG562296AG562297
length736764
length of high quality
(start - end)
660 (52 - 711)182 (134 - 315)
definitionCHROMAT_FILE: MSMg01no482_a11.b1 PHD_FILE: MSMg01no482_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:51 2005CHROMAT_FILE: MSMg01no482_a11.g1 PHD_FILE: MSMg01no482_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGAGTGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTTTTTATCTTATTATTGGTGTGTGTGTGTGTGTGTGT
ATGCCCACCCACGCATGTAGAGGCCGGACTGCAGCACTGGGTCTCTCCCT
CCATCACCATGTCTAGTCCTTTTTGAGGCAGTGTCTCTTGCTGACCGTGG
AACTCCTGTCTTTCACCTAGGCCTGTGGCCACCAAGCCTGAGTGATACTC
TTGTCCCCGCCTAGCTCAGTCCTGATGATTCAGGCATGGCTGGGGCCACC
CCTGGCTTGTCACATGGGTGCCTGCCTGCAAGCTTCAGAATTCCTGTCAC
AAAGCAAGCAGTTTCCTGTGCTTGCCCTTCCAGCCCCTAACACGGGGATA
CAACCTGAAAAGCTGTTTCAGAGGGGCAGAGTGTAGATGCCCAGACATGG
CCAAAGAGAGAATTGGGGAAAAGGACACAGATGGAGAGAGCCAGCAAGAT
GCAGAAAGATAAACAGAAAACACAAACCACAGATGAGGAGTCAGGACTCG
TTTCTGAGTTGCCAGAGATAGATAGTTGCTCCCATGGAAATACTGAGTGA
AAAGAACTGGCTAACGCTGACATTTTAAGAAGGAATTATAAAGCCAGGCA
TGCTGGCGCACACCTTTAGTCCCAGAACTGAGGGAAGCAGAGGCAGGTGG
ATTTCTGTGGGTTCAAGGCCAGCCTGGGTCATCATG
TTTCATATATGATAGGGGAGGCCTGGNGGNCGCCNGGGTTCAGGATCAGC
GNGAACNANAGAAGTTTTCCAGACCGGGGGCNGNGNGNCNCCGGCNCCGG
GANGACNNCCACGGAGGGTTTCTGCCCGGGAACAGAAGCANCAGACAAGA
GGGGAACACAGGGGCTTCTGGNTTGCAGATCTAGCTTGGCTCCGGTTAGG
TCCAAGGGCGACTGGAAAAATCTAGGCGTAAATATTTTTATTTTATTTTA
TTTATTTACTCCCCCCCAACACCCCCCCCCCCCCAGACAGGGTTTCTCTA
TGTAGGTCTGGCTGTCCTGGTTTTTTTTTTTTTCAGAGCACACTGGCTTC
GAACTCATAAAGGTTTTCCTGCCTCTGCCTCTCAAGTGCTGAGCTTAAAG
GTGTGAGACACTACGTCTGGCTCACGTGTAAATATTGTGTGTGTGTGTGT
GTGCGTGTGTGTGTGTGTGTGTGTGTGAGCGCGTGACATTTTTTTCGCGT
CCCCCCCACGCCTTCACTTTTTGTCTTTGGAGCAGCCCCCTCGACTACCA
GCTATACCGCGTTTGTTTCCTATCCCTACTTTTCCGATGTATATATATCG
TCGCCTTACGACCATAACTCACCGCCGTCTCACCTAATCAAACCCTCCAT
TTATATCCAATCGCTTTTTTTTTCTTTGCAATTTAACCACTTTCCATTAC
GCCCGATCCGTTCTTCCCCCCCTTATACCGCCCTTTACGTTTCTATCTAT
CCTTTCGCGCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_a11.b1 MSMg01no482_a11.b1 CHROMAT_FILE:
MSMg01no482_a11.b1 PHD_FILE: MSMg01no482_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:51 2005
         (660 letters)



>mm_chr5_113745489_113746548
          Length = 1060

 Score = 1236 bits (639), Expect = 0.0
 Identities = 651/657 (99%), Gaps = 4/657 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtttttatcttattattggtgtgtgtgtgtgtgtgtgtatgcccacccacgc 63
           ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||
Sbjct: 208 ggaattctgtttttatcttattattggtgtgtgtgtgtgtgt----atgcccacccacgc 263

                                                                       
Query: 64  atgtagaggccggactgcagcactgggtctctccctccatcaccatgtctagtccttttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgtagaggccggactgcagcactgggtctctccctccatcaccatgtctagtccttttt 323

                                                                       
Query: 124 gaggcagtgtctcttgctgaccgtggaactcctgtctttcacctaggcctgtggccacca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaggcagtgtctcttgctgaccgtggaactcctgtctttcacctaggcctgtggccacca 383

                                                                       
Query: 184 agcctgagtgatactcttgtccccgcctagctcagtcctgatgattcaggcatggctggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcctgagtgatactcttgtccccgcctagctcagtcctgatgattcaggcatggctggg 443

                                                                       
Query: 244 gccacccctggcttgtcacatgggtgcctgcctgcaagcttcagaattcctgtcacaaag 303
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 gccacccctggcttgtcacatgggtgccggcctgcaagcttcagaattcctgtcacaaag 503

                                                                       
Query: 304 caagcagtttcctgtgcttgcccttccagcccctaacacggggatacaacctgaaaagct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caagcagtttcctgtgcttgcccttccagcccctaacacggggatacaacctgaaaagct 563

                                                                       
Query: 364 gtttcagaggggcagagtgtagatgcccagacatggccaaagagagaattggggaaaagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtttcagaggggcagagtgtagatgcccagacatggccaaagagagaattggggaaaagg 623

                                                                       
Query: 424 acacagatggagagagccagcaagatgcagaaagataaacagaaaacacaaaccacagat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acacagatggagagagccagcaagatgcagaaagataaacagaaaacacaaaccacagat 683

                                                                       
Query: 484 gaggagtcaggactcgtttctgagttgccagagatagatagttgctcccatggaaatact 543
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaggagccaggactcgtttctgagttgccagagatagatagttgctcccatggaaatact 743

                                                                       
Query: 544 gagtgaaaagaactggctaacgctgacattttaagaaggaattataaagccaggcatgct 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gagtgaaaagaactggctaacgctgacattttaagaaggaattataaagccaggcatgct 803

                                                                    
Query: 604 ggcgcacacctttagtcccagaactgagggaagcagaggcaggtggatttctgtggg 660
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggcgcacacctttagtcccagaactgagggaagcagaggcaggtggatttctgtggg 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)