Query= MSMg01no482_h11.b1 MSMg01no482_h11.b1 CHROMAT_FILE:
MSMg01no482_h11.b1 PHD_FILE: MSMg01no482_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:23 2005
(623 letters)
>mm_chr5_139770607_139771629
Length = 1023
Score = 920 bits (476), Expect = 0.0
Identities = 514/530 (96%), Gaps = 6/530 (1%)
Strand = Plus / Minus
Query: 1 aaggagttggctcctccctggccacgagtactcagtgggagcctattgatgccaccaaaa 60
|||||| ||||||||||| || ||| |||||||||||||| ||||||||||||||||||
Sbjct: 524 aaggagctggctcctcccaggtcacaagtactcagtgggaacctattgatgccaccaaag 465
Query: 61 ctgcatcagctttgctcagcacccttgaagtcaggcgtctttggaacaagacctgtatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 464 ctgcatcagctttgctcagcacccttgaagtcaggcgtctttggaacaagacctgcatag 405
Query: 121 atataaatgggcaagatggcgacactgtggaagagggcttgagccttatgactgggtttc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atataaatgggcaagatggcgacactgtggaagagggcttgagccttatgactgggtttg 345
Query: 181 tttgtgatagggtctcttggtggcagccctgttgatcagtgcttttaggggcagagaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tttgtgatagggtctcttggtggcagccctgttgatcagtgcttttaggggcagagaaag 285
Query: 241 gccatcatggtcctgatgattgaaccatgtctctctggctcacctcccctcatcctacag 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gccatcatggccctgatgattgaaccatgtctctctggctcacctcccctcatcctacag 225
Query: 301 cttcccctaagacttcagggacatccagatgtatatctgcatatgtgtatgtgtgtaagt 360
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 224 cttcccctaagacttcagggac------atgtatatctgcatatgtgtatgtgtgtaagt 171
Query: 361 gttcatgtgtacgtgtgtgtgcatgtgtgtgtatgtgtgtgggtagaagccagggggcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 gttcatgtgtacgtgtgtgtgcatgtgtgtgtatgtgtgtgggtagaagccagggggcaa 111
Query: 421 ccttggacatcatttctcagggactgtccacattatttctcttgctgggcctggaatcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ccttggacatcatttctcagggactgtccacattatttctcttgctgggcctggaatcca 51
Query: 481 caattcaactggactgactgggcagggtaccacaggccatctaacttctt 530
|||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 caattctactggactgactgggcagggtaccacaggccatctaacttctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_h11.g1 MSMg01no482_h11.g1 CHROMAT_FILE:
MSMg01no482_h11.g1 PHD_FILE: MSMg01no482_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:23 2005
(376 letters)
>mm_chr5_139594977_139595751
Length = 775
Score = 688 bits (356), Expect = 0.0
Identities = 371/376 (98%), Gaps = 1/376 (0%)
Strand = Plus / Plus
Query: 1 caaatcctaccagagtaggatggtcataatcgtggcaggaatcccatgagcctctggggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatcctaccagagtaggatggtcataatcgtggcaggaatcccatgagcctctggggc 260
Query: 61 atagcatgagaagctacaagtaaatctgcccatgtggggaaactgaggacagaaggggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagcatgagaagctacaagtaaatctgcccatgtggggaaactgaggacagaaggggta 320
Query: 121 aagcacctggtttggggcagggggtgttacctcgccattcagcaccaagagtagaaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcacctggtttggggcagggggtgttacctcgccattcagcaccaagagtagaaaaga 380
Query: 181 cacccaattcttcaaatatttatgaagcacctactgtataccaatcctcacatagaaact 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 cacccaattcttcaaatatttatgaagcatctactgtataccaatcctcacatagaaact 440
Query: 241 aaaacagagatgatgcaaggggagagaatcctaccccaggtttggaagaagacagaggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaacagagatgatgcaaggggagagaatcctaccccaggtttggaagaagacagaggga 500
Query: 301 ttctgggaagacgagccttccaaactgaccccagagttcaactgtcacccttaaaaaaga 360
|||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||
Sbjct: 501 ttctgggaagacgagccttccaaattgaccccagcgttcaactgtcactcttaaaaa-ga 559
Query: 361 aggtccaggagcaggg 376
||||||||||||||||
Sbjct: 560 aggtccaggagcaggg 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 775
Length adjustment: 9
Effective length of query: 367
Effective length of database: 766
Effective search space: 281122
Effective search space used: 281122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
