Query= MSMg01no482_i21.b1 MSMg01no482_i21.b1 CHROMAT_FILE:
MSMg01no482_i21.b1 PHD_FILE: MSMg01no482_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:29 2005
(562 letters)
>mm_chr5_116433129_116434089
Length = 961
Score = 959 bits (496), Expect = 0.0
Identities = 532/562 (94%), Gaps = 29/562 (5%)
Strand = Plus / Minus
Query: 1 attatgaactgcagaatttgttattaaattaagaactgactgaagaattcttttaacgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 attatgaactgcagaatttgttattaaattaagaactgactgaagaattcttttaacgtg 606
Query: 61 caggttttttttttcacaaattaccttttttcaaaactttttacgtctggagaactgagt 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cagg-tttttttttcacaaattaccttttttcaaaactttttacgtctggagaactgagt 547
Query: 121 cttacatttctattccccatctcatgccccattatctggctctccatcaacagtgaccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cttacatttctattccccatctcatgccccattatctggctctccatcaacagtgaccca 487
Query: 181 gaggcaactttacagtgagaagctcagaacatacgccaaacccagctctactggggtctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaggcaactttacagtgagaagctcagaacatacgccaaacccagctctactggggtctt 427
Query: 241 ctcaccgagcccgccccctcttcttttctcagaaagttgtgagtagtcagtgatgtgatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctcaccgagcccgccccctcttcttttctcagaaagttgtgagtagtcagtgatgtgatg 367
Query: 301 tgacacaaatgcgcacagcaatacccagagggtatgatacacaccagcagggacatggga 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgacacaaatgcgtacagcaatacccagagggtatgatacacaccagcagggacatggga 307
Query: 361 agccacggtgagcagaaacctgctccaggacacctgtcagtggacacctgttggtggaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agccacggtgagcagaaacctgctccaggacacctgtcagtggacacctgttggtggaca 247
Query: 421 cctgacaatgaacacctgtcagtggatacctgttgggggacacctgacaatgaacacctg 480
||||||||||||||||||||||||||||||||||||
Sbjct: 246 cctgacaatgaacacctgtcagtggatacctgttgg------------------------ 211
Query: 481 tcagtggacacctggcagacaatgaacacctggcagacaatgatggttctttcccatctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ----tggacacctggcagacaatgaacacctggcagacaatgatggttctttcccatctg 155
Query: 541 gaagacttttagagttaagcat 562
||||||||||||||||||||||
Sbjct: 154 gaagacttttagagttaagcat 133
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 961
Length adjustment: 10
Effective length of query: 552
Effective length of database: 951
Effective search space: 524952
Effective search space used: 524952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_i21.g1 MSMg01no482_i21.g1 CHROMAT_FILE:
MSMg01no482_i21.g1 PHD_FILE: MSMg01no482_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:29 2005
(434 letters)
>mm_chr5_116270514_116271347
Length = 834
Score = 733 bits (379), Expect = 0.0
Identities = 420/441 (95%), Gaps = 15/441 (3%)
Strand = Plus / Plus
Query: 1 tcctccctcccctttctctatctccctcttgctctgcgccccctccctacacaccctccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tcctccctcccctttctctatctccctcttgctctgcgccccctccctacacaccctccc 259
Query: 61 cccacccca-ccccaccccattgctctggctcccgctcactccgggccctgctcactctg 119
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 260 cccaccccacccccaccccattgctctggctcctgctcactccgggccctgctcactctg 319
Query: 120 gacactggtcaaaggaattcttaaaaagaaaagattatgttagttggacatggttgctca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gacactggtcaaaggaattcttaaaaagaaaagattatgttagttggacatggttgctca 379
Query: 180 cacctttaatcccagcactcaggaggcagaggcaggcagacctctgaatttgaggctatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cacctttaatcccagcactcaggaggcagaggcaggcagacctctgaatttgaggctatc 439
Query: 240 cttgtctactta-------tttttttccaggacagccagggcaacacagagaaacctcac 292
||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 440 cttgtctac--agaacaagtt-----ccaggacagccagggcaacacagagaaacctcac 492
Query: 293 cttgaaagcaagcaagaaaaaacccaaaaagatagatagataaaaataattatccccact 352
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct: 493 cttgaaagcaagcaagaaaaaaaccaaaaagatagatagataaaaataattatctttatt 552
Query: 353 ttttgtttatttaactttaaaactagatgtagtcattttacatgtgtttttgcctgtgta 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttttgtttatttaactttaaaactagatgtagtcattttacatgtgtttttgcctgtgta 612
Query: 413 catgttatgtgcacctcgtgc 433
|||||||||||||||||||||
Sbjct: 613 catgttatgtgcacctcgtgc 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
