Query= MSMg01no482_p02.b1 MSMg01no482_p02.b1 CHROMAT_FILE:
MSMg01no482_p02.b1 PHD_FILE: MSMg01no482_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:58 2005
(508 letters)
>mm_chr5_17252107_17253014
Length = 908
Score = 975 bits (504), Expect = 0.0
Identities = 507/508 (99%)
Strand = Plus / Minus
Query: 1 atctgggaagtatgcagctcaggttttcctgtgggttgcaaacactactgtgtgctgatt 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 708 atctgggaagtatgcagctcaggtcttcctgtgggttgcaaacactactgtgtgctgatt 649
Query: 61 acaaaccaatggaagggtcactttctgacattgaaagtctaaatcactttcagcatggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 acaaaccaatggaagggtcactttctgacattgaaagtctaaatcactttcagcatggag 589
Query: 121 gagacatatgtgttgggatggatcccatttaattagtttgctgtagctgaactccagagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gagacatatgtgttgggatggatcccatttaattagtttgctgtagctgaactccagagt 529
Query: 181 gaatctggctgaagccaactgttaacaaatacaccagattttagcatctggaaggaaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaatctggctgaagccaactgttaacaaatacaccagattttagcatctggaaggaaggc 469
Query: 241 catccaaaacaaattatatgagctacatagaatgtagctctggtgtggtcatctgattcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 catccaaaacaaattatatgagctacatagaatgtagctctggtgtggtcatctgattcc 409
Query: 301 ttagcagtgaccatagcctgcttatgtaggatgaacttttaacccaagaaatgacaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttagcagtgaccatagcctgcttatgtaggatgaacttttaacccaagaaatgacaattt 349
Query: 361 tgcaaacaacagctgcacagctcttatgccaatggaactataaagattcaaataaagtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgcaaacaacagctgcacagctcttatgccaatggaactataaagattcaaataaagtga 289
Query: 421 tttgtgtgtttagtggtattagcccttcagaaatggctatttctttcagactgagaaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tttgtgtgtttagtggtattagcccttcagaaatggctatttctttcagactgagaaaat 229
Query: 481 aagaatgtttggagctcatctttagaag 508
||||||||||||||||||||||||||||
Sbjct: 228 aagaatgtttggagctcatctttagaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_p02.g1 MSMg01no482_p02.g1 CHROMAT_FILE:
MSMg01no482_p02.g1 PHD_FILE: MSMg01no482_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:58 2005
(643 letters)
>mm_chr5_17182064_17183106
Length = 1043
Score = 1118 bits (578), Expect = 0.0
Identities = 633/662 (95%), Gaps = 20/662 (3%)
Strand = Plus / Plus
Query: 1 acattgttcctcagaagactttaggagcatctagtggcttaatgaagtctcagagaggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattgttcctcagaagactttaggagcatctagtggcttaatgaagtctcagagaggat 260
Query: 61 gcatcttccttggatatttacagtgtaaaaggtgtttcaccttgaatggggaaatcacgc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttcttccttggatatttacagtgtaaaaggtgtttcaccttgaatggggaaatcacgc 320
Query: 121 actgctcaccagtgtatttagtattttcataatttcttttaccattaagtatactgttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgctcaccagtgtatttagtattttcataatttcttttaccattaagtatactgttga 380
Query: 181 atactaggacatgaatgaatatagggtggaaggacttgtataatttatatataggtaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactaggacatgaatgaatatagggtggaaggacttgtataatttatatataggtaata 440
Query: 241 tgtttacttctttatatataaatcaatattatatatatgtaatattctgatctaaattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 tgtttacttctttatatataaatcaatattatatatatgtaatattctgatataaattta 500
Query: 301 aatattttaaatcagattatgtaatatccttaaattct---atgatttaaatcaatttat 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 aatattttaaatcagattatgtaatatccttaaattctgatatgatttaaatcaatttat 560
Query: 358 ataatgacatgcatgtatatttatataactactacatttcgtagaatatttagtaaagtt 417
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 561 ataatgacatgcatgtatatttatataactactacatttcatagaatatttagtagagtt 620
Query: 418 taatcttgtgcacgctc-aactggccaggaagaacgacgctgcaacaggatccttctgca 476
|||||||| || || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 taatcttgcgcgcg-tccaactggccaggaagaacaacgctgcaacaggatccttctgca 679
Query: 477 cacgtttattcagtcctgtttcttcttgtttatatctcccttgtttatatctcccttgtt 536
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cacgtttattcagtcctgattcttcttgtttatatctcccttgtttatatctcccttgtt 739
Query: 537 tatatctccc---------------ccgaaccctgggcctctcactcttttatactctca 581
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 740 tatatctcccttgtttatatctcccccgaaccctgggcctctcactcttttatactctca 799
Query: 582 gttcccatccacgcacagcaggccacgccacctcaccaggcacgcagcttcagctaatca 641
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 800 gttcccatccacgcacagcaggccatgccacctcaccaggcacgcagcttcagctaatca 859
Query: 642 gg 643
||
Sbjct: 860 gg 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
