CCCGAGACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGAATTCCTTCCTTCCTGTGATCCGGCCTCACAGACT
CACAGTGGCTTGACCATCTGCTCTGGTCTAAGCCAGCCAGCTAACACCTT
GAAGCTGGAGCCAGTTCACGATGGCTGCAGCCTTGAGGGAGGAAGCGCAG
CTGGGAGTCGAGATTTGCCCGACTTTGGGTTTAATTAGTTCCAAGCCTTC
TGCTGCAGACCAATCAGATCTTTGAAAGCAATCAATTAGATAATCAATGA
AAACAACAAAAAAAATAGTCGCACCCTCTCAAAGAAACTAACGAAACTGC
TTATTAAATCCAGTATAGGAATGGTCTATTTGGGGATAGGAAATTTAGTC
CCAGCAGAAAGGAAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAA
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGATAACAAACAAACAGTAACAGTGCTGTGTGGGGAAAAC
CATATAGAACTGCCAATCATACAGAGATGGAAGAGTGTTCATGATAAAAG
GCCTGGAGAGATGGCTCAGTACCTACTACTCTTGCAGAGGACCTGAGTTT
AGATCCCAGAATCCATAGCAGGTGGCTCACAACCACCTTGAGCTCAGCCC
TAGGTGAACTTGACACCTTCTTTTGCCCTTCAAGGGCAGAGCACTCACAT
AN

NNNCCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCCAAGCCTTGTGATTGCCTG
CTCTGATTTTTATTTTAGCTATCCTAGAGAGTGAGAATTGGCCATTGTGG
TTTTGATGTGCATTTCTCTGATAATGGTGTTAAAGAGCATACTGAATGTT
TTCTTCTTTTTGTTTGTTTGGGTTTTGTTTTGTTTTGTTTTTTGTTTTTT
GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTA
GACCAGGCTGGCCTCGATCTTATAAATCCACCTGCCTCTGCTTCCCGGCA
AATGTTTTCTTTAGGGGCACACTCACTTAGGACCTTTGCCTGTTTTAAAA
AGTGAGTTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTGTATGTGTGCACACACACATACACGTGTGTATGCATGCATG
CATGCACAGGGTAATAAAGGTCTAAGGACAACTTGCACGTGTAAGTTCTT
TCCTACCAAATGTGAAAAATGGTATTGATTACTATTCAGCCGACTTGTAA
GTCTTTTTCTTTTACCCACTGAACCTTTTTTGAGGGCCCGTCTGTCTCCC
TCTTCTTTCCTTCATTTCTTCCACCGCTTTCCTTCTCCTCCCCTCCCCCT
CTACTTTTCTTCCTTTCACCTTTTTTCGTTTTCTCCCN

Query= MSMg01no483_c06.b1 MSMg01no483_c06.b1 CHROMAT_FILE:
MSMg01no483_c06.b1 PHD_FILE: MSMg01no483_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:13 2005
         (624 letters)



>mm_chr5_131558543_131559567
          Length = 1025

 Score =  874 bits (452), Expect = 0.0
 Identities = 536/596 (89%), Gaps = 52/596 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttcctgtgatccggcctcacagactcacagtggcttgaccatctgctctggtctaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tccttcctgtgatccggcctcacagactcacagtggcttgaccatctgctctggtctaag 487

                                                                       
Query: 61  ccagccagctaacaccttgaagctggagccagttcacgatggctgcagccttgagggagg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 486 ccagccagctaacaccttgaagctggagccagttcacgctggctgcagccttgagggagg 427

                                                                       
Query: 121 aagcgcagctgggagtcgagatttgcccgactttgggtttaattagttccaagccttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aagcgcagctgggagtcgagatttgcccgactttgggtttaattagttccaagccttctg 367

                                                                       
Query: 181 ctgcagaccaatcagatctttgaaagcaatcaattagataatcaatgaaaacaac-aaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 366 ctgcagaccaatcagatctttgaaagcaatcaattagataatcaatgaaaacaacaaaaa 307

                                                                       
Query: 240 aaaatagtcgcaccctctcaaagaaactaacgaaactgcttattaaatccagtataggaa 299
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaatagtcgcacccacacaaagaaactaacgaaactgcttattaaatccagtataggaa 247

                                                                       
Query: 300 tggtctatttggggataggaaatttagtcccagcagaaaggaaaaggagagagagagaga 359
           |||||||||||| ||||||||||||||||||||| |||||||||||              
Sbjct: 246 tggtctatttggagataggaaatttagtcccagccgaaaggaaaag-------------- 201

                                                                       
Query: 360 gagagagagagagaaagaaagagagagagagagagagagagagagagagagagagagaga 419
                                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ----------------------gagagagagagagagagagagagagagagagagagaga 163

                                                                       
Query: 420 gagagagagagagagagagagataacaaacaaacagtaacagtgctgtgtggggaaaacc 479
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gagagagagagagagagataaataacaaacaaacagtaacagtgctgtgtggggaaaacc 103

                                                                       
Query: 480 atatagaactgccaatcatacagagatggaagagtgttcatgat-aaaaggcctggagag 538
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 102 atatagaactgccaatcatacagagatggaagagtgttcatgataaaaaggcctggagag 43

                                                                   
Query: 539 atggctcagtacctactactcttgcagaggacctgagtttagatcccagaatccat 594
           ||||||||||| ||||||              ||||||||||||||||||||||||
Sbjct: 42  atggctcagtatctacta--------------ctgagtttagatcccagaatccat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 136
Number of extensions: 48
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1025
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1015
Effective search space:   623210
Effective search space used:   623210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)