NTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACTGAGGAACACCAAATGACTGAGAAGCACCTAAGGAAATA
TTCAACATCCTTAGACATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAAGGCTAATATAGAGCATGATATAGCTGTGT
CTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGT
TGGGAAGGAAAGGGTTTATTTGGCTTACACTTCTATACTGCTGTTCATCA
CCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGAT
TCAGAGGCCATGGAGGAATGTTCTTTACTGGCTTGCTTAAACCACAGGGT
CTGAGGGAAAGCTTGAGTAAGAGCTACTGAAATAGCCAGTGTTCTCAGAA
CTTGCAAAGCACAAAGGCATGGCTCAAAGCACAAAGGCTCATCGCTGTGG
AAAGAAGAGAAGGCTGAGGACTAGCTTCCAGACTGTTGGCTGGATTCAAA
GTCTGTACAAAGCTGCAGCTGGGATACAGCTTTCGGTGCTTCTCAATGGC
ACTGTCCCCTTGTTTCCAGTTGTCTAGCATCAGGCCATAGCAGAAGCACT
TGACCTTGTCATTGACACCAGTGTAGTAAAAGCCAGCACGAGCCAGACTC
CTTTCTGACCAGGAACTCCAGCAGAAGAAGCTGACTATGTGGACNATCGG
TACAGCTCACAGGNAAAGTCATACTTCTACTCAAA

NNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGTTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGA
TAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAAT
TTGCTNAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACT
ATGCCCCTCCCTTAGATTTGGN

Query= MSMg01no483_d20.b1 MSMg01no483_d20.b1 CHROMAT_FILE:
MSMg01no483_d20.b1 PHD_FILE: MSMg01no483_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:23 2005
         (587 letters)



>mm_chr5_60415588_60416574
          Length = 987

 Score = 1089 bits (563), Expect = 0.0
 Identities = 578/583 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaactgaggaacaccaaatgactgagaagcacctaaggaaatattcaacatcc 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaactgaggaacaccaaatgtctgagaagcacctaaggaaatattcaacatcc 264

                                                                       
Query: 65  ttagacatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagacatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcaga 324

                                                                       
Query: 125 aggctaatatagagcatgatatagctgtgtcttagtcagggtttctattcctgcacaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggctaatatagagcatgatatagctgtgtcttagtcagggtttctattcctgcacaaac 384

                                                                       
Query: 185 atcatgaccaagaagcaagttgggaaggaaagggtttatttggcttacacttctatactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcatgaccaagaagcaagttgggaaggaaagggtttatttggcttacacttctatactg 444

                                                                       
Query: 245 ctgttcatcaccaaggaagtcaggactggaactcaagcaggtcagaaagcaggagctgat 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcttcatcaccaaggaagtcaggactggaactcaagcaggtcagaaagcaggagctgat 504

                                                                       
Query: 305 tcagaggccatggaggaatgttctttactggcttgcttaaaccacagggtctgagggaaa 364
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 505 gcagaggccatggaggaatgttctttactggcttgctttaaccacagggtctgagggaaa 564

                                                                       
Query: 365 gcttgagtaagagctactgaaatagccagtgttctcagaacttgcaaagcacaaaggcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcttgagtaagagctactgaaatagccagtgttctcagaacttgcaaagcacaaaggcat 624

                                                                       
Query: 425 ggctcaaagcacaaaggctcatcgctgtggaaagaagagaaggctgaggactagcttcca 484
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 ggctcaaagcacaaaggctcatcgctgtggaaggaagagaaggctgaggactagcttcca 684

                                                                       
Query: 485 gactgttggctggattcaaagtctgtacaaagctgcagctgggatacagctttcggtgct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gactgttggctggattcaaagtctgtacaaagctgcagctgggatacagctttcggtgct 744

                                                      
Query: 545 tctcaatggcactgtccccttgtttccagttgtctagcatcag 587
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctcaatggcactgtccccttgtttccagttgtctagcatcag 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)