Query= MSMg01no483_l04.b1 MSMg01no483_l04.b1 CHROMAT_FILE:
MSMg01no483_l04.b1 PHD_FILE: MSMg01no483_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:00 2005
(692 letters)
>mm_chr5_18396492_18397583
Length = 1092
Score = 1301 bits (673), Expect = 0.0
Identities = 685/689 (99%)
Strand = Plus / Plus
Query: 4 ggaattcttttattccaatctatgcaaataactgtttatttttatcataaaatatttaaa 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttaagacaatctatgcaaataactgtttatttttatcataaaatatttaaa 263
Query: 64 ggttaaggtggtaaagaataatttcagagagccacctggaaaaaattaagaacatttatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggttaaggtggtaaagaataatttcagagagccacctggaaaaaattaagaacatttatg 323
Query: 124 ccaatcaagttctgaagccattcttctcaggagttgaatttagtgaagtgacaaaaaata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaatcaagttctgaagccattcttctcaggagttgaatttagtgaagtgacaaaaaata 383
Query: 184 atcttttgagtaaggaatatgtaaagataatctttgattttcattttaattgcattcaac 243
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 atcttttgagtaaggaatatgtaaagataatctttgattttcattttaatttcattcaac 443
Query: 244 aggcatatattctttaaataattaatatgtttctttttattcatctatgtttacaattaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggcatatattctttaaataattaatatgtttctttttattcatctatgtttacaattaa 503
Query: 304 taatacagataaacttcataagtaacatataaacacaataataatttttcatgcatataa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taatacagataaacttcataagtaacatataaacacaataataatttttcatgcatataa 563
Query: 364 gcacacatgaaaataattttcaggaaaacaagcatatattatttaatatattcatgatga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcacacatgaaaataattttcaggaaaacaagcatatattatttaatatattcatgatga 623
Query: 424 gaaggataaaataagataaaatataatttcacatactggaaaatacaaatttggagaaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaaggataaaataagataaaatataatttcacatactggaaaatacaaatttggagaaat 683
Query: 484 ggaacaatattcttaatattaattaagtaaatctaatttgtatttaaaaactatgtcact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggaacaatattcttaatattaattaagtaaatctaatttgtatttaaaaactatgtcact 743
Query: 544 ttaaacccaaagagactattttaattatattatatgactatgtacctctgatatgctatt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttaaacccaaagagactattttaattatattatatgactatgtacctctgatatgctatt 803
Query: 604 tataaaatattagtgctttaaattttagatatgtgtgtatttcatgttttgaggcaaggt 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tataaaatattagtgctttaaattttagatatgtgtgtatttcatgttttgaggcaaggt 863
Query: 664 ctcatataatgaagactagtctcaggttt 692
|||||||||||||||||||||||||||||
Sbjct: 864 ctcatataatgaagactagtctcaggttt 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_l04.g1 MSMg01no483_l04.g1 CHROMAT_FILE:
MSMg01no483_l04.g1 PHD_FILE: MSMg01no483_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:00 2005
(585 letters)
>mm_chr5_18476642_18477630
Length = 989
Score = 719 bits (372), Expect = 0.0
Identities = 405/418 (96%), Gaps = 5/418 (1%)
Strand = Plus / Minus
Query: 1 caaaggacaacacttaacaatttgtacaaaggattatagtagtgtttctttatagaaagt 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caaaggccaacacttaacaatttgtacaaaggattatagtagtgtttctttatagaaagt 359
Query: 61 gaaattagctgtataaaatagaactagtaatggattaataaactatttcaatgttattaa 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gaaattagctttataaaatagaactagtaatggattaataaactatttcaatgttattaa 299
Query: 121 actaacaaaccaacactaatttgtagct----taaaggcaatagtcctgttcccaggaaa 176
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 298 actaacaaaccaacactaatttgtagcttaaataaaggcaatagtcctgttcccaggaaa 239
Query: 177 gagaataatcgatttgaagctcaatatttatag-tttttttttttgagaacattaatttc 235
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 238 gagaataatcgatttgaagctcaatatttatagttttttttttttgagaacattaatttc 179
Query: 236 ttgctttttcttttgtatagtttttctccttgcactggagttttccacctgttacccttc 295
|||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 178 ttgctttttcttgggtgtagttttgctccttgcactggagttttccacctgttacccttc 119
Query: 296 ttaggcctggatttgtaaaaagatattgtttagatttggttttgccactgaatatcttga 355
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 118 ttaggcctggatttgtaaaaagatattgtttagatttggttttgtcattgaatatcttga 59
Query: 356 tttctccacctatgctaattgagagttttgctggttacagtaggctgggctggcattt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 tttctccacctatgctaattgagagttttgctggttacagtaggctgggctggcattt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 989
Length adjustment: 10
Effective length of query: 575
Effective length of database: 979
Effective search space: 562925
Effective search space used: 562925
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
