Query= MSMg01no483_p11.b1 MSMg01no483_p11.b1 CHROMAT_FILE:
MSMg01no483_p11.b1 PHD_FILE: MSMg01no483_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:21 2005
(598 letters)
>mm_chr5_89706969_89707966
Length = 998
Score = 1038 bits (537), Expect = 0.0
Identities = 587/613 (95%), Gaps = 15/613 (2%)
Strand = Plus / Minus
Query: 1 agccactatacctaagggtctggattgagtgttctgtgcttcaaacctccactcttaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agccactatacctaagggtctggattgagtgttctgtgcttcaaacctccactcttaccc 630
Query: 61 tgaaactacagggtctgccaagtattgcatcatcagaacaaacagtgctcctgtggtcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgaaactacagggtctgccaagtattgcatcatcagaacaaacagtgctcctgtggtcat 570
Query: 121 cagctcaggaagacccagggctttagaagctctgtgtcaggaactggggacaaagaccac 180
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cagctcaggaagtcccagtgctttagaagctctgtgtcaggaactggggacaaagaccac 510
Query: 181 atacctttctatgacaatcattatccttttatatagacttatcacagtttctattcactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atacctttctatgacaatcattatccttttatatagacttatcacagtttctattcactt 450
Query: 241 ccttattttttcacctgtgtaattatttgcaaaagtccctctttccccaccaccctgtat 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccttattcattcacctgtgtaattatttgcaaaagtccctctttccccaccaccctgtat 390
Query: 301 tttccaggaggtcagaaagcataattattttgatcatagcaccgcctaacacaatggcac 360
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 389 tttccaggaggtcagaaagcataattattttgatcatagtattgcctaacacaatggcac 330
Query: 361 acacttgaaaagtatttgcacaatgacttaattcagtcagaaaatgctgatcacatatta 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acatttgaaaagtatttgcacaatgacttaattcagtcagaaaatgctgatcacatatta 270
Query: 421 tgatatttgatcacatatattgttgatgctgaattacttcctggagttaagagcttactc 480
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 269 tgatatttgatcacatatattgttgatgctgaattacttcctggagcgaagagcttactc 210
Query: 481 ttttatgagaaataaaatataattcgtaataaataataataa---------------tag 525
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 209 ttttatgagaaataaaatataattcgtaataaataataataacaacaacaataataatag 150
Query: 526 caccaatgattaacattgcactgatctcctctctgctttacgacaaccatttgaagttga 585
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 149 caccaatgattaacattgcactgatctcctctctgctttatgacaaccatttgaagttga 90
Query: 586 tacagttattaag 598
|||||||||||||
Sbjct: 89 tacagttattaag 77
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_p11.g1 MSMg01no483_p11.g1 CHROMAT_FILE:
MSMg01no483_p11.g1 PHD_FILE: MSMg01no483_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:21 2005
(564 letters)
>mm_chr5_89528838_89529801
Length = 964
Score = 1075 bits (556), Expect = 0.0
Identities = 562/564 (99%)
Strand = Plus / Plus
Query: 1 ccactgtgcttttagtggcaaggctcagttctcagatggaacttagagccaggttgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccactgtgcttttagtggcaaggctcagttctcagatggaacttagagccaggttgtttt 260
Query: 61 taaacagaattttaaatatcaatgaatctgagaaactagagatttcaatacatagcctat 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaacagaattttaaatatcaacgaatctgagaaactagagatttcaatacatagcctat 320
Query: 121 aagaggctgagcttgaggaaagagcaggtgcctgcataatttactgtgctgttgaatcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaggctgagcttgaggaaagagcaggtgcctgcataatttactgtgctgttgaatcgt 380
Query: 181 gatctctaagaatgcattcccagccactgtattttcggaagaacttctaacttgtttgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatctctaagaatgcattcccagccactgtattttcggaagaacttctaacttgtttgga 440
Query: 241 aaagttaacagtagttattactattcacaatagttgtgaagctccctttcaaagccgtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagttaacagtagttattactattcacaatagttgtgaagctccctttcaaagccgtgc 500
Query: 301 atttttgcagactggccttttcatcaggacactgtgaaaacatctgtaagactgtgtgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttttgcagactggccttttcatcaggacactgtgaaaacatctgtaagactgtgtgat 560
Query: 361 gaggtacattttcattgagagatagaaatatcgttctcctcccatgtgatgctgacactc 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggtaccttttcattgagagatagaaatatcgttctcctcccatgtgatgctgacactc 620
Query: 421 cccgaaggacatcccactaatagaacccaccagtgagtgggcattctgaaagacatggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccgaaggacatcccactaatagaacccaccagtgagtgggcattctgaaagacatggat 680
Query: 481 ttatgttcacagtttgaacttcagtgatacttataaaaaccacattatatattcatctaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttatgttcacagtttgaacttcagtgatacttataaaaaccacattatatattcatctaa 740
Query: 541 aaaggtttttaaagttatgtgtca 564
||||||||||||||||||||||||
Sbjct: 741 aaaggtttttaaagttatgtgtca 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
