Query= MSMg01no484_d19.b1 MSMg01no484_d19.b1 CHROMAT_FILE:
MSMg01no484_d19.b1 PHD_FILE: MSMg01no484_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:43 2005
(524 letters)
>mm_chr5_144508138_144509061
Length = 924
Score = 563 bits (291), Expect = e-164
Identities = 356/405 (87%), Gaps = 44/405 (10%)
Strand = Plus / Minus
Query: 120 cctttaatcccagcactcgggaggcagaggaaggcagatttctgagtttgaggccagtct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 cctttaatcccagcactcgggaggcagaggaaggcagatttctgagtttgaggccagtct 865
Query: 180 ggtctacagagtgagttccaggacagccagggctacacagagaaaccctgactcaaaaaa 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 864 ggtctacagagtgagttccaggacagccagagctacacagagaaaccctgactcaaaaaa 805
Query: 240 atttttttactatacacacacacacacacatatatatttttttgtatatatatatatata 299
| |||||||||||||||||||||||||| |
Sbjct: 804 aaatttttactatacacacacacacacac------------------------------a 775
Query: 300 catatatgtatgtatatatatgtatatatatatatatgcatgtatgtatgtatgtgtata 359
|| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 774 ca----------catatatatgtatatatatatat----atgtatgtatgtatgtgtata 729
Query: 360 tatagtttctgttgtctcaaacctccatggctccatatctaaagaggttagaacatgaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tatagtttctgttgtctcaaacctccatggctccatatctaaagaggttagaacatgaat 669
Query: 420 ggattaaggcagtcaattctttcagtctactatttgtgtcccaggggttgaactctgatc 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaattaaggcagtcaattctttcagtctactatttgtgtcccaggggttgaactctgatc 609
Query: 480 atcagatttgaaggcaaaagcctttatctgctgagacatattccc 524
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atcagatttgaaggcaaaagcctttatctgctgagacatattccc 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_d19.g1 MSMg01no484_d19.g1 CHROMAT_FILE:
MSMg01no484_d19.g1 PHD_FILE: MSMg01no484_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:43 2005
(669 letters)
>mm_chr5_144372448_144373516
Length = 1069
Score = 1143 bits (591), Expect = 0.0
Identities = 667/729 (91%), Gaps = 60/729 (8%)
Strand = Plus / Plus
Query: 1 aggacatgtttaggcagtttagtgagaccctgtatcagaataaataaaaaaa------gg 54
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 141 aggacatgtttaggcagtttagtgagaccctgtatcagaataagtaaaaaaaaaaaaagg 200
Query: 55 ggg-ggggttaaggtgtggctcagtagcagagcccctgcctagaatcccccagtgagggg 113
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggtggggttaaggtgtggctcagtagcagagcccctgcctagaatcccccagtgagggg 260
Query: 114 ct-------------------agag------------------------ggg-------- 122
|| |||| |||
Sbjct: 261 ctggggcgtggctcagtggttagagcccctgcctagaatcccccagtgaggggctagaga 320
Query: 123 --tagagcctttcagtgaaggcccaggagcagggctcagctatagagtgctgtctagcaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtagagcctttcagtgaaggcccaggagcagggctcagctatagagtgctgtctagcat 380
Query: 181 gcccacgccctggcctccatctccagcactgagagttagagaaggaagaataaggggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccacgccctggcctccatctccagcactgagagttagagaaggaagaataaggggaaa 440
Query: 241 agaaaaggcaaaagacattcgctgaaactgaactagattccagaggaacggggccagtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaaggcaaaagacattcgctgaaactgaactagattccagaggaacggggccagtgg 500
Query: 301 aagcaatatgtttgctggctcctctcctgtcgtcttgtgtggtcctagacgagttactgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcaatatgtttgctggctcctctcctgtcgtcttgtgtggtcctagacgagttactgt 560
Query: 361 ctgggagtctcacttcccaggctctaacagggacagtatctgccttgtttgctgggtatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgggagtctcacttcccaggctctaacagggacagtatctgccttgtttgctgggtatg 620
Query: 421 ggaggatcctgggagggatccagggactgtgtgaactgagcttagtcttcagagggtcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaggatcctgggagggatccagggactgtgtgaactgagcttagtcttcagagggtcct 680
Query: 481 gaaaagtaaggaagctgtggtgatgctgacgttggtggtgttgatggacttgctgggtat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaagtaaggaagctgtggtgatgctgacgttggtggtgttgatggacttgctgggtat 740
Query: 541 gggcagaatggagcctctagtcgctcatttagtatgctaaatctcagagaggatagagcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggcagaatggagcctctagtcgctcatttagtatgctaaatctcagagaggatagagcc 800
Query: 601 aggtggtaatggcacctgtaatcaaagcatccaagaggcagacagatggcaagttcaaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggtggtaatggcacctgtaatcaaagcatccaagaggcagacagatggcaagttcaaga 860
Query: 661 ccaggctag 669
|||||||||
Sbjct: 861 ccaggctag 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
