BAC Information

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BAC

Clone NameMSMg01-485N01
Chromosome5 (Build37)
Map Location 100,482,891 - 100,567,046
singlet/doubletdoublet
Overlap geneEnoph1, BC062109
Upstream geneRasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl
Downstream geneLOC666417, Sec31a, LOC100041797, Lin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485N01.T7 (MSMg01no485_n01.b1)MSMg01-485N01.TJ (MSMg01no485_n01.g1)
ACCAG565170AG565171
length742740
length of high quality
(start - end)
264 (176 - 439)433 (243 - 675)
definitionCHROMAT_FILE: MSMg01no485_n01.b1 PHD_FILE: MSMg01no485_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:54 2005CHROMAT_FILE: MSMg01no485_n01.g1 PHD_FILE: MSMg01no485_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,566,783 - 100,567,046)(100,482,891 - 100,483,323)
sequence
NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGGTAAATACCGCCCAGTAACGGTGTAAATAAATGGCTCT
TCTGTGGGAGACTGACAAAGAAGGAACCAGTTGAGCTTGTCCCTTACCGA
ACACAATCTGCATGTCTAGAGATAAGCACTATTTTTATTGCTTTCAGTTA
TCCATAGCTTAGTTTTACACAGCTTGTGTAGTTACTGGTGTTGGTTTATG
CATGCATATATACACCAGTGTGCTGATACGCAAGTATGTGCTACAGACAA
AGTTAATGCGGTTTTGTATGTCTTTCTCTTCGGGATATTTGATATGTCAA
TCTTCTGTGGTAGAACTAGCTTTCAGATTTCCCCAGGTCATTTTGCTCCT
AGTAAGGCTGGATGGCTGGCATGGTCCCAGCACTTAGAATACTAACGCTA
ACGAAGTGCGGAAACCCTGCCCTGACATTTCTGCTCCTTTAAAAATGTAT
TATTTGTTGCTTTTACTTTCTTGTTGGTGCCTTTGTCATTTTCTGCATGT
CCTTTATTGAAGGAAGTAATGAAAATACTGTGGTCATTAATTTATCCTAC
GAAGTAGCCTGAGCTACATCACGCAACCTGCTCTTCTGAGTTGCATGTCT
GGCTGGGTGCCTCTCTCTTGAATGAAGCATTGAATTGCANGTCCTCCAGA
CTGGTGAACTTGTTAGTTTCCCTAGTCGCCTGAACTTTTTTA
ATTCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATAGCGACTCACTAT
TGGCTTATTCAAACATTAACAGAAAGAACACAGTGCATCACGACTTTGTT
CCTGTGGGCTGGAGGCTTATCTTTGTTCACATAGCAACCACTTGATGTAT
GACTTTACCCAGTGCCAAGGGGCAATAGACAGAGAGGAGGGTCCGGCCAG
GTGGTGTTGACTCAGATAATATAGCCCTGCTATGTCTTCACAGCCCCCTT
TATCTTATGGTCAAGATGTTCCCAGGAATGTTTTAACTACGAGGCATACC
CAGGTTTGTTTTTCTCTTTTCTCAGCCCCAGGCAGCCTCTAGGCTCACAA
ACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTGAAATTT
CATCTTTCTTTCACTATTAGATATCCTAACTTTATTTCATGGCTGTTACT
AATGACAGACCCCCACCCTCCCCCACCCCCCAGCTCCACAACCTTCCTGC
TGTACATATTTGTGTGCGTCTGACTGTATGTCTGTCTGTACAGTGGTTCA
GGAGCTTTGGAGGAGGCCAAGTGAGGAGAGCCCGCAGGGCCGAATGACTT
GGAGTAATTATTCTAATTACATAACACATAGTGAGCCGGCTTTGCCAGGA
GTACGATCGTGTATTTTCAGGGCCTTCTGACCACTGTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_n01.b1 MSMg01no485_n01.b1 CHROMAT_FILE:
MSMg01no485_n01.b1 PHD_FILE: MSMg01no485_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:54 2005
         (264 letters)



>mm_chr5_100566583_100567246
          Length = 664

 Score =  511 bits (264), Expect = e-149
 Identities = 264/264 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcactatttttattgctttcagttatccatagcttagttttacacagcttgtgtagttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gcactatttttattgctttcagttatccatagcttagttttacacagcttgtgtagttac 405

                                                                       
Query: 61  tggtgttggtttatgcatgcatatatacaccagtgtgctgatacgcaagtatgtgctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tggtgttggtttatgcatgcatatatacaccagtgtgctgatacgcaagtatgtgctaca 345

                                                                       
Query: 121 gacaaagttaatgcggttttgtatgtctttctcttcgggatatttgatatgtcaatcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gacaaagttaatgcggttttgtatgtctttctcttcgggatatttgatatgtcaatcttc 285

                                                                       
Query: 181 tgtggtagaactagctttcagatttccccaggtcattttgctcctagtaaggctggatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgtggtagaactagctttcagatttccccaggtcattttgctcctagtaaggctggatgg 225

                                   
Query: 241 ctggcatggtcccagcacttagaa 264
           ||||||||||||||||||||||||
Sbjct: 224 ctggcatggtcccagcacttagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no485_n01.g1 MSMg01no485_n01.g1 CHROMAT_FILE:
MSMg01no485_n01.g1 PHD_FILE: MSMg01no485_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:55 2005
         (433 letters)



>mm_chr5_100482691_100483523
          Length = 833

 Score =  814 bits (421), Expect = 0.0
 Identities = 430/433 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccggccaggtggtgttgactcagataatatagccctgctatgtcttcacagcccccttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccggccaggtggtgttgactcagataatatagccctgctatgtcttcacagcccccttta 260

                                                                       
Query: 61  tcttatggtcaagatgttcccaggaatgttttaactacgaggcatacccaggtttgtttt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttatggtaaagatgttcccaggaatgttttaactacgaggcatacccaggtttgtttt 320

                                                                       
Query: 121 tctcttttctcagccccaggcagcctctaggctcacaaacaaccagcaatttctgagtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcttttctcagccccaggcagcctctaggctcacaaacaaccagcaatttctgagtac 380

                                                                       
Query: 181 tttatatgacttacaggtcttgaaatttcatctttctttcactattagatatcctaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatatgacttacaggtcttgaaatttcatctttctttcactattagatatcctaactt 440

                                                                       
Query: 241 tatttcatggctgttactaatgacagacccccaccctcccccaccccccagctccacaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttcatggctgttactaatgacagacccccaccctcccccaccccccagctccacaac 500

                                                                       
Query: 301 cttcctgctgtacatatttgtgtgcgtctgactgtatgtctgtctgtacagtggttcagg 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcctgctgtgcatatttgtgtgcgtctgactgtatgtctgtctgtacagtggttcagg 560

                                                                       
Query: 361 agctttggaggaggccaagtgaggagagcccgcagggccgaatgacttggagtaattatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctttggaggaggccaagtgaggagagcccgcagggccgaatgacttggagtaattatt 620

                        
Query: 421 ctaattacataac 433
           |||||||| ||||
Sbjct: 621 ctaattacgtaac 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)