Query= MSMg01no485_p08.b1 MSMg01no485_p08.b1 CHROMAT_FILE:
MSMg01no485_p08.b1 PHD_FILE: MSMg01no485_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:06 2005
(335 letters)
>mm_chr5_24595170_24595904
Length = 735
Score = 613 bits (317), Expect = e-180
Identities = 329/335 (98%), Gaps = 4/335 (1%)
Strand = Plus / Plus
Query: 1 aaccaaagggagagggcaggcggggggggggggtgtacagtgattctgagatggcagttt 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaccaaagggagagggc----ggggggggggggtgtacagtgattctgagatggcagttt 260
Query: 61 tgtccctggcttccaaatgtctgctccttcagccacatctatcttttgtggagtgggtga 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtccctggctcccaaatgtctgctccttcagccacatctatcttttgtggagtgggtga 320
Query: 121 gcaccaccccactttcctgcccatgccaagattctgttcttaaggatctgctatgagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaccaccccactttcctgcccatgccaagattctgttcttaaggatctgctatgagtga 380
Query: 181 cagccaagtccctgctggagcccaggaggcggcagctccctcctcctacagcaccaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagccaagtccctgctggagcccaggaggcggcagctccctcctcctacagcaccaggaa 440
Query: 241 ctagaggaactagaggttcctggagctcatgaggcaatagggtaggcgcctgcctggctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagaggaactagaggttcctggagctcatgaggcaatagggtaggcgcctgcctggctc 500
Query: 301 ttggcccaaggtcccctcctcagtttgttacgctt 335
||||||||||||||||||||||||||| |||||||
Sbjct: 501 ttggcccaaggtcccctcctcagtttgctacgctt 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space: 236676
Effective search space used: 236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_p08.g1 MSMg01no485_p08.g1 CHROMAT_FILE:
MSMg01no485_p08.g1 PHD_FILE: MSMg01no485_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:07 2005
(527 letters)
>mm_chr5_24759852_24760778
Length = 927
Score = 582 bits (301), Expect = e-170
Identities = 378/425 (88%), Gaps = 34/425 (8%)
Strand = Plus / Minus
Query: 1 gctgtgccaatcccagtgggctgccttccatacactttacctttccctaggtttctctgt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 393 gctgtgccaatcccagtgggctgccttccatacactttacctttccctgggtttctccat 334
Query: 61 gtgctacctccagctcccttctcaccacttcccacagggctcaaaggagtccattagcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtgctacctccagctcccttctcaccacttcccacagggctcaaaggagtccattagcaa 274
Query: 121 gatataaatgataaaaacttcatcttgttgtctttgagttttgataaatgtgagcaaggt 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 273 gatataaatgataaaaacttcatcttgttctctttgagttttgataaatgtgagcaaggt 214
Query: 181 taaaaactgttggcttgggagggggaaaagaaaaaaaaactgttggtttgaataactcct 240
||||||||||||| |||||||||||||
Sbjct: 213 taaaaactgttgg---------------------------------tttgaataactcca 187
Query: 241 aatttccttgagaaacctgaaatgttaccagagagcagcatcaaaatagatttgacaggc 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 186 aatttccttgagaaacctgaaatgttaccagagagcagcatcaaaatacatttgacaggc 127
Query: 301 caggcgtggtggtacacacctttaatcccagcactcgggaggcaaaggcaggcggatttc 360
| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cgggcttggtggcgcacacctttaatcccagcactcgggaggcaaaggcaggcggatttc 67
Query: 361 tgagtttgaggccagcct-ggtctacaaagtgagttccaggacagccagggctgcacaga 419
|||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||
Sbjct: 66 tgagtttgaggccagccttggtctacaaagtgagttccaggacagccagagctatacaga 7
Query: 420 gaaac 424
|||||
Sbjct: 6 gaaac 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
