NNNNAAAGTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTAAA
TCCGCGGAATTCTTCTAAATTTTACGTAAGCTCTGCAGTTTAAAACACAG
ACTAGGACAGTCAAGGCACAGCACTCTTCTTCAACTCTGGACTTTGCTTT
TCTCTTTCCTCTCAATGTATGGAAGATACTGGTGATGCGATGTGACTTTA
AAATAATTTAGAAAATAACCAGAACCAAAATGCGAGTGCATTAGTTTTTA
TTCCTTATACTTTTCTACAAAACCCACAAGTCTAAGTGTTATTATGTCTC
TTTAGGACAGAACTGAAGGTGGCTGAGAACAATAGGGTTTAGATTTGCTA
AGAAAACCTGGTTCAGGGGGCACAAGCAACCTGTACCTGCTCTCAGGGTA
TTAAATGGAAGATGTTTGAGGTCAGATCTTTGTGTCTCCAAAATTCATTC
TCTTGCTCCAAAAACCTCCAGGTTCCTTCTTTACCACCTCCATGGGGATA
TACAAGTCAGTCATGTCTGTGACAAAGGACATAGACAATCTGTGGTGAGC
TCTTTTCCAAGAAATATTTGGGTAGAGGAAGATTCGCTTTTCTCCAGGCA
TGACTGGTCTTTGACAACTTGTGGAACTGAATTTTATAAAATAGCCTATT
AAGTTTCACTTTCATATATTTACATAGTTAGGACAAAGTCTCATTTGGGA
GTCCTGTCAATGAGTATGTAGATCCGTCTCCCATGTAAATTCCATTCTCA
TGTG

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGTGAAAGGCAAATCAA
AACAACCCTGAGATTCCACCTCACACTAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTTTTGGTGGGATTGCAGGCTTATACAACCACTCTGGAAATCAGT
CTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAGTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
AAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTTAAAAGAATGAATTTATG
AAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAAAACCTANGATACCCAAGATATAAGATACAATTTCCTAAAC
ACATGAAACTCAAGAAAAATGAAGACTGGAGTGTGGACACTATGCCCCTC
CTTAGAAGTGGGACAAAACACCCCTGGGAAGAGTTACAGAGA

Query= MSMg01no486_c21.b1 MSMg01no486_c21.b1 CHROMAT_FILE:
MSMg01no486_c21.b1 PHD_FILE: MSMg01no486_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:24 2005
         (648 letters)



>mm_chr5_47864553_47865600
          Length = 1048

 Score = 1236 bits (639), Expect = 0.0
 Identities = 642/643 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttctaaattttacgtaagctctgcagtttaaaacacagactaggacagtcaagg 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gaattcttctaaatttaacgtaagctctgcagtttaaaacacagactaggacagtcaagg 789

                                                                       
Query: 66  cacagcactcttcttcaactctggactttgcttttctctttcctctcaatgtatggaaga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cacagcactcttcttcaactctggactttgcttttctctttcctctcaatgtatggaaga 729

                                                                       
Query: 126 tactggtgatgcgatgtgactttaaaataatttagaaaataaccagaaccaaaatgcgag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tactggtgatgcgatgtgactttaaaataatttagaaaataaccagaaccaaaatgcgag 669

                                                                       
Query: 186 tgcattagtttttattccttatacttttctacaaaacccacaagtctaagtgttattatg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgcattagtttttattccttatacttttctacaaaacccacaagtctaagtgttattatg 609

                                                                       
Query: 246 tctctttaggacagaactgaaggtggctgagaacaatagggtttagatttgctaagaaaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tctctttaggacagaactgaaggtggctgagaacaatagggtttagatttgctaagaaaa 549

                                                                       
Query: 306 cctggttcagggggcacaagcaacctgtacctgctctcagggtattaaatggaagatgtt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cctggttcagggggcacaagcaacctgtacctgctctcagggtattaaatggaagatgtt 489

                                                                       
Query: 366 tgaggtcagatctttgtgtctccaaaattcattctcttgctccaaaaacctccaggttcc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgaggtcagatctttgtgtctccaaaattcattctcttgctccaaaaacctccaggttcc 429

                                                                       
Query: 426 ttctttaccacctccatggggatatacaagtcagtcatgtctgtgacaaaggacatagac 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttctttaccacctccatggggatatacaagtcagtcatgtctgtgacaaaggacatagac 369

                                                                       
Query: 486 aatctgtggtgagctcttttccaagaaatatttgggtagaggaagattcgcttttctcca 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aatctgtggtgagctcttttccaagaaatatttgggtagaggaagattcgcttttctcca 309

                                                                       
Query: 546 ggcatgactggtctttgacaacttgtggaactgaattttataaaatagcctattaagttt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggcatgactggtctttgacaacttgtggaactgaattttataaaatagcctattaagttt 249

                                                      
Query: 606 cactttcatatatttacatagttaggacaaagtctcatttggg 648
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cactttcatatatttacatagttaggacaaagtctcatttggg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)