Query= MSMg01no486_d12.b1 MSMg01no486_d12.b1 CHROMAT_FILE:
MSMg01no486_d12.b1 PHD_FILE: MSMg01no486_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:27 2005
(650 letters)
>mm_chr5_54106204_54107253
Length = 1050
Score = 1180 bits (610), Expect = 0.0
Identities = 640/650 (98%)
Strand = Plus / Plus
Query: 1 tgctacctggtaccaatgatcccagcataaaactagcaccttaacagtcccctaagtctg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tgctacctggtaccaatgatcccagcataaaactagcaccttaacagtcccccaagtctg 260
Query: 61 aaggggcagagaccagcaaccgattctcactccaatctggcccttggcaaattatgaagg 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggggcagagaccagcaactgattctcactccaatctggcccttggcaaattatgaagg 320
Query: 121 atgcttgttagtctttaaggctcaagtacatgactctctgagagccatttcagtgtgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcttgttagtctttaaggctcaagtacatgactctctgagagccatttcagtgtgtca 380
Query: 181 ggcacagggcgatccttgggtgactcccttaacacaggagtcaccaagaagccagagtaa 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ggcacagggcgatccttgggtgactcccttaacacaggagtcaccaggaagccagagtaa 440
Query: 241 aattattatagcacttccccagcttcccttagaacaagttctctgcaaggacaactcaaa 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattagtatagcacttccccagcttcccttagaacaagttctctgcaaggacaactcaaa 500
Query: 301 gatggacacatagagccgagtgctatctggagctcacacaaggagcccagtttgcatcct 360
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 501 gatggacacatagagccgagtgctatctggagttcacacaaggagcccagtttgcaccct 560
Query: 361 tgtgcattttcagtggtcagatgggccccatcattcaacgccatcactctatacttccag 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgcatcttcagtggtcagatgggccccatcattcaacgccatcactctatacttccag 620
Query: 421 tcccctgtccataaagtacagaccacaatataaaaccccattgacacccagggagcacat 480
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 tcccttgtccataaagtacagaccacaatataaaacctcattgacacccagggagcacat 680
Query: 481 ggtatatatgtgtggtgaaggttgtaaagaaagaagtagtacagggttgatacaagtacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtatatatgtgtggtgaaggttgtaaagaaagaagtagtacagggttgatacaagtacc 740
Query: 541 cacacttcttgggtcttctagatgtggtgtgtcatttcccatacagttctccaggccaga 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 741 cacacttcttgggtcttctagatgtggtgtgtcatttcccatacagttctccaggcaaga 800
Query: 601 gcatcctgtcatgatgcatgtgcatcctccaagtggctcccatgtgcctt 650
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcatcctgtcatgatgcatgtgcatcctccaagtggctcccatgtgcctt 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_d12.g1 MSMg01no486_d12.g1 CHROMAT_FILE:
MSMg01no486_d12.g1 PHD_FILE: MSMg01no486_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:28 2005
(646 letters)
>mm_chr5_54264373_54265419
Length = 1047
Score = 1220 bits (631), Expect = 0.0
Identities = 643/647 (99%), Gaps = 1/647 (0%)
Strand = Plus / Minus
Query: 1 ctagcctgacttccctcagtgatgagcggtgatatggaagtataaggcagatgagcccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 ctagcctgacttccctcagtgatgagcggtgatatggaagtataaggcagatgagcccta 932
Query: 61 gagggctccctccttcctcaccgtgctgctttgtcatggtgtctcatggtgtctcatcgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gagggctccctccttcctcaccgtgctgctttgtcatggtgtctcatggtgtctcatcgc 872
Query: 121 agcaacggaaaccctaaccaagaccgctggcttccaccttaacaggattcttaagaaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 agcaacggaaaccctaaccaagaccgctggcttccaccttaacaggattcttaagaaccc 812
Query: 181 tgagttattaaaaagacatccattcttgcactgggatttaaattaaaatgtattattaat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tgagttattaaaaagacatccattcttgcactgggatttaaattaaaatgtattattaag 752
Query: 241 gttctctttaagtgggtgtaagagagaaaccaggaataaaaataaaaagtggggctatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gttctctttaagtgggtgtaagagagaaaccaggaataaaaataaaaagtggggctatct 692
Query: 301 taggctaaggtggagacacgcagagctggtctttgtgtgaggaaagaagggaatgatgag 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 691 taggctaaggtggagacacgctgagctggtctttgtgtgaggaaagaagggaatgatgag 632
Query: 361 aaagagacccccaactgagcacagcagcagcactgagacactgcacagcaaacacagggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaagagacccccaactgagcacagcagcagcactgagacactgcacagcaaacacagggc 572
Query: 421 acag-ccccacccacccagtggttacaatgcagaccaaaccacaaataatgcaatacatt 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 acagcccccacccacccagtggttacaatgcagaccaaaccacaaataatgcaatacatt 512
Query: 480 tgctgacttcgttaaatgggctttaagggtttctgtgtcaggggagggaaactgatggta 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 511 tgctgacttcgttaaatgggctttaagggtttctgtgtcaagggagggaaactgatggta 452
Query: 540 gactggtagacatgacatataggctggtccaccaagggcctataatttgtggtaatggaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gactggtagacatgacatataggctggtccaccaagggcctataatttgtggtaatggaa 392
Query: 600 tatgaagctcttcgtgcactaaggctactacgaatatagcacattgt 646
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tatgaagctcttcgtgcactaaggctactacgaatatagcacattgt 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1047
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1037
Effective search space: 659532
Effective search space used: 659532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
