Query= MSMg01no486_e22.b1 MSMg01no486_e22.b1 CHROMAT_FILE:
MSMg01no486_e22.b1 PHD_FILE: MSMg01no486_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:34 2005
(627 letters)
>mm_chr5_124517044_124518070
Length = 1027
Score = 1052 bits (544), Expect = 0.0
Identities = 615/658 (93%), Gaps = 33/658 (5%)
Strand = Plus / Plus
Query: 1 ctaagccgctttcccaccttttcttttttctgagacagagtttctctgtgtagccctggc 60
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 169 ctaagccgctttcccaccttttcttttttctgagacagggtttctctgtgtcgccctggc 228
Query: 61 tgtcctggaactcactctgtagcccaggctggcctcgaactcagaaatccacctgcctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tgtcctggaactcactctgtagcccaggctggcctcgaactcagaaatccacctgcctct 288
Query: 121 gcccaccacaacccactttttaacttt--aaaaaaaaaagttattttattttttaattat 178
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 289 gcccaccacaacccactttttaactttaaaaaaaaaaaagttattttattttttaattat 348
Query: 179 atacgtggagtccaaaagagggcatcagatcccctggtgctggggttctggccccctgta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atacgtggagtccaaaagagggcatcagatcccctggtgctggggttctggccccctgta 408
Query: 239 agagtagc----act--------------------------gactcttaaccactgagcc 268
|||||||| ||| |||||||||||||||||||
Sbjct: 409 agagtagcacagactcttaggccccctgtaagagtagcacagactcttaaccactgagcc 468
Query: 269 atctctacctttttgaagtgggcgtaattgtatagctggtgttatgtgtgtataggattg 328
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 469 atctctacctttttgaagtgggcgtaattgtatagctggtgttacgtgtgtataggattg 528
Query: 329 ttttcatatgttgtttgtgtaaaacaaaatttaacactggctacttcagttaggtttttg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttttcatatgttgtttgtgtaaaacaaaatttaacactggctacttcagttaggtttttg 588
Query: 389 gtttggtttggtttgtttttttttgtttttcaagacagggtctctttgtgtatttctggc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 589 ttttggtttggtttgtttttttttgtttttcaagacagggtctctttgtgtattcctggc 648
Query: 449 tgtcctggaacttactctgtaggccaggctggcctcgaactcagaaatccgcctgcctct 508
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 649 tgtcctggaactcactctgtaggccaggctggcctcgaactcagaaatctgcctgcctct 708
Query: 509 gcctcccaagtgctgggattaaaggcatgtgccaccactgccgggcagtcagtttttttt 568
||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 709 gcctctcaagtgctgggattaaaggcatgtgccatcactgctgggcagtcagtttttttt 768
Query: 569 aaatgaatttttactggcattaaattattattaaattatttttggcatgcctaattaa 626
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aa-tgaatttttactggcattaaattattattaaattatttttggcatgcctaattaa 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_e22.g1 MSMg01no486_e22.g1 CHROMAT_FILE:
MSMg01no486_e22.g1 PHD_FILE: MSMg01no486_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:34 2005
(591 letters)
>mm_chr5_124724521_124725511
Length = 991
Score = 969 bits (501), Expect = 0.0
Identities = 507/509 (99%)
Strand = Plus / Minus
Query: 83 cctagcactggagatttggagattggaagggtccctgatagtcactggctgtcattccag 142
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 991 cctagcactggagatttggagataggaagggtccctgatagtcactggctgtcattccag 932
Query: 143 ccagcgaaagactctgtctcaaaggaggtggacagcctcttctgaggctgacatctgagc 202
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 ccagagaaagactctgtctcaaaggaggtggacagcctcttctgaggctgacatctgagc 872
Query: 203 ttgtcctccggcatccatgtgaatgaatgcacacacatgcgtaagatatttaatcccagc 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ttgtcctccggcatccatgtgaatgaatgcacacacatgcgtaagatatttaatcccagc 812
Query: 263 actcaggaagcagaaacacgtagatctctgaattggagctcaaccttatctatacagtga 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 actcaggaagcagaaacacgtagatctctgaattggagctcaaccttatctatacagtga 752
Query: 323 gttataggccagccagggctaaagggctgtattgtgatgtcttgcaggggagggggagca 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gttataggccagccagggctaaagggctgtattgtgatgtcttgcaggggagggggagca 692
Query: 383 aagcaggttaactcatttgcacattgccttcctgcttttgcatagcaacaacaaagctaa 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aagcaggttaactcatttgcacattgccttcctgcttttgcatagcaacaacaaagctaa 632
Query: 443 gtagtttttattcttttgcctttttgtagattaaaatgtgtattaaaatgtctcatctgg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtagtttttattcttttgcctttttgtagattaaaatgtgtattaaaatgtctcatctgg 572
Query: 503 actgtcaatttggagtaatttttttgttttttgttttttgagacagggtttctctgtgta 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 actgtcaatttggagtaatttttttgttttttgttttttgagacagggtttctctgtgta 512
Query: 563 gccctggctgtcctggaactcactttgta 591
|||||||||||||||||||||||||||||
Sbjct: 511 gccctggctgtcctggaactcactttgta 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
