Query= MSMg01no486_e24.b1 MSMg01no486_e24.b1 CHROMAT_FILE:
MSMg01no486_e24.b1 PHD_FILE: MSMg01no486_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:35 2005
(686 letters)
>mm_chr5_79151838_79152923
Length = 1086
Score = 1201 bits (621), Expect = 0.0
Identities = 669/691 (96%), Gaps = 13/691 (1%)
Strand = Plus / Plus
Query: 2 gaattctcaaatattttccc---tagcaaacctttagtttgaatcatcacccacaccaca 58
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctcaaatattt---cagttagcaaacctttagtttgaatcatcacccacaccaca 258
Query: 59 aaactcctctctgaagtattcctatttcatttgattgtatctctgggtttatttgcaaaa 118
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaactcctcactgaagtattcctatttcatttgattgtatctctgggtttatttgcaaaa 318
Query: 119 ttattaaggcaaagatttgaaaagtatttttttaatattgagtggcatacacagaaatat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttattaaggcaaagatttgaaaagtatttttttaatattgagtggcatacacagaaatat 378
Query: 179 agtaatatgctataaattctcaataattctgtctcggtctgtctctgtctatgtctgtct 238
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agtaatatgctataagttctcaataattctgtctcggtctgtctctgtctatgtctgtct 438
Query: 239 ctctgcgtctctgtgtctctctcattactttcttcttttttttattctctgtctcctaag 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 439 ctctgcgtctctgtgtctctctcattactttcttcttctttttattctctgtctcctaag 498
Query: 299 ttcttgatatataggaataaatttaaaatattctcttcatatgcagctatggagagattt 358
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 499 ttcttgatatataggaataaatttaaaatactctcttcatatgcagctatggagagattt 558
Query: 359 tatgtaatacaagctacactgataaaactgccaaagaatatatagaagccataatattta 418
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 559 tatgaaatacaagctacactgataaaactgccaaagaaaatatagaagccataatattta 618
Query: 419 tttcatctatcaactttgttaattgtatgagacaatatcagtagataagtataaatattg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttcatctatcaactttgttaattgtatgagacaatatcagtagataagtataaatattg 678
Query: 479 tttgcatgcatataatgtagttttatgaacaccaaattagaaaacaaaaatgttttctaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tttgcatgcatataatgtagttttatgaacaccaaattagaaaacaaaaatgttttctaa 738
Query: 539 caagaggaactactcat---agttttatatttcagggttcataagtcatgacataagaac 595
||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 739 caagaggaactactcctcacagttttatatttcggggttcataagtcatgacataagaac 798
Query: 596 gaaatanatcttttcctatagccatgctacattattgcaacttctttaatttcagtacac 655
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gaaat----cttttcctatagtcatgctacattattgcaacttctttaatttcagtacac 854
Query: 656 atattctcgccatctaagaacttatcttgca 686
|||||||||||||||||||||||||||||||
Sbjct: 855 atattctcgccatctaagaacttatcttgca 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_e24.g1 MSMg01no486_e24.g1 CHROMAT_FILE:
MSMg01no486_e24.g1 PHD_FILE: MSMg01no486_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:35 2005
(676 letters)
>mm_chr5_79299377_79300452
Length = 1076
Score = 932 bits (482), Expect = 0.0
Identities = 482/482 (100%)
Strand = Plus / Minus
Query: 195 tggagaacatcgatggctgaacaaatgaataagatagtagcaggaaatgatgcagagaag 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 tggagaacatcgatggctgaacaaatgaataagatagtagcaggaaatgatgcagagaag 1017
Query: 255 ctaaccaagaacaagctggatcgagctctgtaaagaattgcaaagacaattagctgtcag 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 ctaaccaagaacaagctggatcgagctctgtaaagaattgcaaagacaattagctgtcag 957
Query: 315 tcaatgaactagcaagtcactggaaactctatcagaggaagtgaaataattgggcatcca 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 tcaatgaactagcaagtcactggaaactctatcagaggaagtgaaataattgggcatcca 897
Query: 375 tttaataaaggctagctttgctagattcactgagggcagcttggtggttaggaggtttta 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tttaataaaggctagctttgctagattcactgagggcagcttggtggttaggaggtttta 837
Query: 435 acgatgctcatggagaggaatggactgattcaagtggaaaggataaaaactgtttggatt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 acgatgctcatggagaggaatggactgattcaagtggaaaggataaaaactgtttggatt 777
Query: 495 agtatatagaatatacatagaaaggaagattcaatgctgactctgaattatgccaaacta 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 agtatatagaatatacatagaaaggaagattcaatgctgactctgaattatgccaaacta 717
Query: 555 tgcatttcaagtacattgaaaagccaggtaaattatcaatattccacagaagagtgctga 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tgcatttcaagtacattgaaaagccaggtaaattatcaatattccacagaagagtgctga 657
Query: 615 tataccaagtgatcttacatcttcacatgcattacagtatagacttaaacaaacatatac 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tataccaagtgatcttacatcttcacatgcattacagtatagacttaaacaaacatatac 597
Query: 675 tc 676
||
Sbjct: 596 tc 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
