Query= MSMg01no486_k06.b1 MSMg01no486_k06.b1 CHROMAT_FILE:
MSMg01no486_k06.b1 PHD_FILE: MSMg01no486_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:00 2005
(600 letters)
>mm_chr5_51885827_51886829
Length = 1003
Score = 1069 bits (553), Expect = 0.0
Identities = 585/597 (97%), Gaps = 5/597 (0%)
Strand = Plus / Plus
Query: 8 gaattctcggtcttattacca-ggcataaagaaagctaaaattagtgaagtgaaccttat 66
||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctcggtcttaaaaacaaggcataaagaaagctaaaattagtgaagtgaaccttat 267
Query: 67 cagcaaggatataggtttttctgaagagatgagatttttttcggcggagtgctcagtcta 126
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cagcaaggatataggtttt-ctgaagagatgagatttttttcggcggagtgctcagtcta 326
Query: 127 agtgtactggatctatgagctgtgaataattgtttgcagaacaagggagaaaattacatt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agtgtactggatctatgagctgtgaataattgtttgcagaacaagggagaaaattacatt 386
Query: 187 taaaattcctaaatgtcatttatgcagctttttatttcatttctcctacatcccgatgtt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taaaattcctaaatgtcatttatgcagctttttatttcatttctcctacatcccgatgtt 446
Query: 247 cctactcagcaacatgtaactaacaagaccctacagcgcctttactgtgaggaaagggga 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 447 cctactcagcaacatgtaactaacaagaccctacagcgcctttactgtgaggaaagggaa 506
Query: 307 aaaaaa---gctactttaaaccttaatttaccactggctgctgaagcccggtattcacaa 363
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 507 aaaaaaaaagctactttaaaccttaatttaccactggctgctgaagcccagtattcacaa 566
Query: 364 ctctcttaagtaccccttaacgcttcgctttcgctcacagcgaatggcaagacaaacatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctctcttaagtaccccttaacgcttcgctttcgctcacagcgaatggcaagacaaacatt 626
Query: 424 gtttaatacagcccgctaactgaattatgtcattgccagccttttctccaattaatggca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gtttaatacagcccgctaactgaattatgtcattgccagccttttctccaattaatggca 686
Query: 484 gagatggatcattcatagtgaatctgaaaccgtctttctcaggttaaacagctggcaaaa 543
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gagatggatcattcacagtgaatctgaaaccgtctttctcaggttaaacagctggcaaaa 746
Query: 544 cacccaccctgcatcttaaagtcgtccacagaccacagctaccagtctgccagtaaa 600
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 747 cacccaccctgcatcttaaagtcgcccacagaccacagctaccagtctgccagtaaa 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1003
Length adjustment: 10
Effective length of query: 590
Effective length of database: 993
Effective search space: 585870
Effective search space used: 585870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_k06.g1 MSMg01no486_k06.g1 CHROMAT_FILE:
MSMg01no486_k06.g1 PHD_FILE: MSMg01no486_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:00 2005
(436 letters)
>mm_chr5_52045946_52046780
Length = 835
Score = 704 bits (364), Expect = 0.0
Identities = 427/470 (90%), Gaps = 37/470 (7%)
Strand = Plus / Minus
Query: 3 taatcaccacagggaagtgatctatgcgaatgt----------------gtacagttcaa 46
|||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 522 taatcaccacagggaaatgatctatgcgaatgtgtattagctctacttagtacagttcaa 463
Query: 47 ggtacattcctacatggtgcagtgataccaggaggtacttcacagcatatatgtggcacc 106
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gatacattcctacatggtgcagtgataccaggaggtacttcacagcatatatgtggcacc 403
Query: 107 aagcactacttgaagaacagaacactaacaggacagaactgactgtgactgaactgcttc 166
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 402 aagcactacttgaagaacagaacactaacaggacagaacttactgtggctgaactgcttc 343
Query: 167 acctttagaatgtctaaatagttttccaaacatctgattctcttttactttaatccttgt 226
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 342 acctttagaatgtctaaatagttttccaaacttctgattctcttttactttaatccttgt 283
Query: 227 agtaggtattcatgcaatattatatatacattcatgtaagagtcaagaatatatatatat 286
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agtaggtattcatgcaata-aatatatacattcatgtaagagtcaagaatatatatatat 224
Query: 287 ------------------atacatta--atatatgtgtgtgtgtataatagaacatatgt 326
|||||||| ||||||||||||||||||||||||||||||||
Sbjct: 223 atatatatatacacacacatacattaatatatatgtgtgtgtgtataatagaacatatgt 164
Query: 327 attgatgcaagtacaaatcttgaattgttttgtgtacatacaatactatttctggtattc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 attgatgcaagtacaaatcttgaattgttttgtgtacatacaatactatttctggtattc 104
Query: 387 tttcatttctatctatatagaaatgaagttagtgataattgtatgagtac 436
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tttcatttctatctatatagaaatgaagttagtgataattgtatgagtac 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 835
Length adjustment: 9
Effective length of query: 427
Effective length of database: 826
Effective search space: 352702
Effective search space used: 352702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
