BAC Information

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BAC

Clone NameMSMg01-486K10
Chromosome5 (Build37)
Map Location 49,986,768 - 50,151,838
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnip4, LOC100041668, LOC100041659, EG433885
Downstream geneLOC666223, Gpr125, EG637307, LOC100041015, LOC242987
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486K10.T7 (MSMg01no486_k10.b1)MSMg01-486K10.TJ (MSMg01no486_k10.g1)
ACCAG565804AG565805
length727742
length of high quality
(start - end)		529 (74 - 602)497 (78 - 574)
definitionCHROMAT_FILE: MSMg01no486_k10.b1 PHD_FILE: MSMg01no486_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:01 2005CHROMAT_FILE: MSMg01no486_k10.g1 PHD_FILE: MSMg01no486_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,151,310 - 50,151,838)(49,986,768 - 49,987,264)
sequence
NGGGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTGGTATCCATAGATGAATAAAAAAGAGAAAGCATAT
TACTTTGAAAAGATGGAAAAGGATATGTGCTTCTTCATCTTGGAGAAAGT
TGGGATTCCTATCAGGACGAATAATTTATCTCTTGCTGTGACAAATGCTG
TCTTGAGGTCTTTCAGGTTGGAATATATTGTTTCTCTCCTTGGCCATGGT
CTGAAAATAATGATCTTCATATTTCAAGAAATTAGCCACTATACACATCA
GCTTTGTAAAAATGGAAGTGATAGAAGATATTGCATCATTTGCTTTTATT
TTTGTACTGCTTATTTTATTAGCTTCTTTTTCTTTAAAATGAGAACATGC
CATCCTAGAAGACAGAGAGACTCTCCTACAACTCAGGAGTCAATTCAGAC
TTACAAGGCTCAACATTACACTTTGTGGAAGATTCATGAAGATGGATATC
AATAGAGAATTGCTGGGGAAGGGATAATTGTGTCCTGTGAATCTTCCTTT
AAGTTGTGCAGATTTTAAAGGACACAGCTCTCCTGAGTCACTATCTCAGT
GGCAAGGATTTTCAGTGATGCATGTGCTCTCACACTCCTGTAAGTAATTC
CAATGCATTGGTTAACCATGCTAAACTCAGGGAGGATTGTTTATCTGGGC
ACCTGATTATGTATTATCATAGATATT

CCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGACACCGCATGCTGATGTAC
AAGGCCATGGTTTCTTTAACTAAAAGAATGCACACAGAGATCTCAGAAAG
ATTTTGCTGCAGGTATAAACATATAGGCTTTAATTTTTCTTAACATCCTT
GATGACAAGGAGTGGAAATTCCTATTTTAGGAGAGCCTGAACTTCACGTG
CATATCTTAAGTTTTCATTTGATGAGACTGGAAATGGGAAGTACACCAAG
CACTTCCATCCCCTGGAATATAGCAGTTACCTCCAGGAAAAGTTTGTGGG
CAACCCTGAGAGTTACATGTTGAAGGAATGATTGCTTTCATCTTCATAGA
ATAACATTTCTCCTTGGCAAACAGCGACGAGAGATGAGGAGTTACTACTC
AGAATTTTCACTGTCTGAGAGTCTTTTCTAAACATGAAAGAAATTGAGTC
TGTTACTTCAAAGGAAAAAATATAACTGACAGAAAATTTGCCTGTGATAA
ACTTGAGCTTTCAGTGAAATACAGAATAGTTCCAGGAACTTATACCTAAC
ACGAGCTTAGCTGATTGCCAACAGCATCTGGCAAAAGTAGTATGTCTATA
AAGATAGTTGGTAAAAATATTATACTATGTAATGCGTAAACATTTGGAAG
ATGATATATTGGTTCCAAATCATGATGTTAGCAAAGTATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_k10.b1 MSMg01no486_k10.b1 CHROMAT_FILE:
MSMg01no486_k10.b1 PHD_FILE: MSMg01no486_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:01 2005
         (529 letters)



>mm_chr5_50151110_50152038
          Length = 929

 Score =  953 bits (493), Expect = 0.0
 Identities = 520/529 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagatgaataaaaaagagaaagcatattactttgaaaagatggaaaaggatatgtgcttc 60
           ||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 729 tagatgaataaaaaagagagagcatattactttgaaaaggtggaaaaggatgtgtgcttc 670

                                                                       
Query: 61  ttcatcttggagaaagttgggattcctatcaggacgaataatttatctcttgctgtgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttcatcttggagaaagttgggattcctatcaggacgaataatttatctcttgctgtgaca 610

                                                                       
Query: 121 aatgctgtcttgaggtctttcaggttggaatatattgtttctctccttggccatggtctg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aatactgtcttgaggtctttcaggttggaatatattgtttctctccttggccatggtctg 550

                                                                       
Query: 181 aaaataatgatcttcatatttcaagaaattagccactatacacatcagctttgtaaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaaataatgatcttcatatttcaagaaattagccactatacacatcagctttgtaaaaat 490

                                                                       
Query: 241 ggaagtgatagaagatattgcatcatttgcttttatttttgtactgcttattttattagc 300
           |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 489 ggaagtgatagaagattttgcatcatttgcctttatttttgtactgcttattttattaga 430

                                                                       
Query: 301 ttctttttctttaaaatgagaacatgccatcctagaagacagagagactctcctacaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttctttttctttaaaatgagaacatgccatcctagaagacagagagactctcctacaact 370

                                                                       
Query: 361 caggagtcaattcagacttacaaggctcaacattacactttgtggaagattcatgaagat 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 369 caggagtcaattcagacttacaaggctcaacattacaccttgtggaagattcatgaagat 310

                                                                       
Query: 421 ggatatcaatagagaattgctggggaagggataattgtgtcctgtgaatcttcctttaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggatatcaatagagaattgctggggaagggataattgtgtcctgtgaatcttcctttaag 250

                                                            
Query: 481 ttgtgcagattttaaaggacacagctctcctgagtcactatctcagtgg 529
           ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 249 ttgtgcagatttttaaggacacagctctcctgagtcactatctcagtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_k10.g1 MSMg01no486_k10.g1 CHROMAT_FILE:
MSMg01no486_k10.g1 PHD_FILE: MSMg01no486_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:01 2005
         (497 letters)



>mm_chr5_49986568_49987464
          Length = 897

 Score =  907 bits (469), Expect = 0.0
 Identities = 490/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgacaccgcatgctgatgtacaaggccatggtttctttaactaaaagaatgcacacag 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgacactgcatgctgatgtacaaggccatggtttctttaactaaaagaatgcacacag 260

                                                                       
Query: 61  agatctcagaaagattttgctgcaggtataaacatataggctttaatttttcttaacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatctcagaaagattttgctgcaggtataaacatataggctttaatttttcttaacatc 320

                                                                       
Query: 121 cttgatgacaaggagtggaaattcctattttaggagagcctgaacttcacgtgcatatct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 cttgatgacaaggagtggaaattcctattttaggagagcctgaacttcacatgcatatct 380

                                                                       
Query: 181 taagttttcatttgatgagactggaaatgggaagtacaccaagcacttccatcccctgga 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 taagttttcatttgatgagactggaaatgggaagtacaccaaacacttccatcccctgga 440

                                                                       
Query: 241 atatagcagttacctccaggaaaagtttgtgggcaaccctgagagttacatgttgaagga 300
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattgcagttacctccaggaaaagtttgtgggcaaccctgagagttacatgttgaagga 500

                                                                       
Query: 301 atgattgctttcatcttcatagaataacatttctccttggcaaacagcgacgagagatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 501 atgattgctttcatcttcatagaataacatttctccttggcaaacaatgacgagagatga 560

                                                                       
Query: 361 ggagttactactcagaattttcactgtctgagagtcttttctaaacatgaaagaaattga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagttactactcagaattttcactgtctgagagtcttttctaaacatgaaagaaattga 620

                                                                       
Query: 421 gtctgttacttcaaaggaaaaaatataactgacagaaaatttgcctgtgataaacttgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctgttacttcaaaggaaaaaatataactgacagaaaatttgcctgtgataaacttgag 680

                            
Query: 481 ctttcagtgaaatacag 497
           |||||||||||||||||
Sbjct: 681 ctttcagtgaaatacag 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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