BAC Information

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BAC

Clone NameMSMg01-486N04
Chromosome5 (Build37)
Map Location 60,615,424 - 60,702,008
singlet/doubletdoublet
Overlap geneCbfa2t2-ps1
Upstream geneLOC100041425, LOC546866
Downstream geneLOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486N04.T7 (MSMg01no486_n04.b1)MSMg01-486N04.TJ (MSMg01no486_n04.g1)
ACCAG565936AG565937
length742754
length of high quality
(start - end)		693 (50 - 742)672 (81 - 752)
definitionCHROMAT_FILE: MSMg01no486_n04.b1 PHD_FILE: MSMg01no486_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:14 2005CHROMAT_FILE: MSMg01no486_n04.g1 PHD_FILE: MSMg01no486_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,615,424 - 60,616,108)(60,701,337 - 60,702,008)
sequence
NNGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCATTGGTTTGTTTAATTGGATACCCAATGGGCATGAATGA
GTTTTAGTTGTTCTTCATTGCACTTAGAAACTCCTATTTTTTTAGAACAT
TTTTAACTGATGAAAGCACTAACAATGGCCCCACCCACAGTAAAATTTCC
CTCCCTTTTGAATTTTCCATTGTCAGTACCATTGCAAAATCTAGTTCCAA
TTGTGCCAATTTCTTCCCACTTCCAGACCTGGCATTGGTCAGCCTTTTTA
TTTATGTGTTTTGGCATTATTTCTATCTAAGAAAGCTGGAAATTGGCTTG
TCTCTCTTAAATCCATAGCTTCTGAAAGATCTCATAATGAACCCATCCAA
AAATTCTTACTTTCCATTATTTTGATTAGAAAAATTCACAGAAAGGGGTA
AAATAAAACTGTGAATGTTCCTTTTCTCAAGGTAAAAATGTCACCAGATG
AGAGCATGAGGTTTTATTCGGCTTTAGTGTCCTGAAATGTTATTTAGTTT
TGATGCCAAATTTTATAAATCATAGAGACATTTATCATTCCATTCCAATA
GATCAGCAGAAACCTCAGGGAGAAGCTTTTACATTATTGCAAAATTTCAA
TGGTTGTCTCATAATAAAACTTTGTCCACTAAGAGACTTTCTTGTTTCCT
TTCACATCAGACATGCTCATATTAACTAACACAAGCTCTGTC

NCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGAGAAATGAAAGACAT
TTTTAATTTTTTACGATAAAATTAAATTGGAAAGTTTTAAAAGCAAAATT
CTGCCCTAAATCTGAAAATCAATTTTAGTAATACTTGAATATATGATTTT
TGTGAGAATAATCAATATTTATTATATTCATTTCCTTTTTCCACTTGGAT
TTAGATTGCTCTACTGCTTTGGGGCATATATTCATAAGTTGCATGACACA
ATCTGAATCTTGGAAACCCGAAAAGGTACATAGTAAATAGAATTGAACAT
GCCTCTTCGAAATCATCTGTCAGTTAGTATGAAAACTTTTAAAAGTGTTG
ATGTATTGTGTCTTTAGTGGTACAACTTATGAGAAAAGAATCAATAGTAA
ACACAAAAGAAAAAGCCTTTACAAACTATGGTTCAATAATTACCATTACC
ATTTTTGGTTCATATCTTAGACTGCTAATCATTATATGATGTTAGATATT
TAGATTTTAGAGTATAAGAGATATATGACCCACAAGTTAAACATTCATCA
CTAAATAGTTATTAACGGGTTATACAATATAAATGCCTAGAAGAAGTAAG
GCCTTCCTGCTCTCCAGCCAAGGCTTCCGCCAAACCAAGTCACCCACCAG
GCAAGACAAGGACTCCCTTCCATGCCATAGGCTGCCAGACATCTCTCCTC
CTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_n04.b1 MSMg01no486_n04.b1 CHROMAT_FILE:
MSMg01no486_n04.b1 PHD_FILE: MSMg01no486_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:14 2005
         (693 letters)



>mm_chr5_60615216_60616308
          Length = 1093

 Score = 1247 bits (645), Expect = 0.0
 Identities = 675/685 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   tctcattggtttgtttaattggatacccaatgggcatgaatgagttttagttgttcttca 68
           |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 209 tctcattggtgtgtttaattggatacccaatgggcatgaattagttttagttgttcttca 268

                                                                       
Query: 69  ttgcacttagaaactcctatttttttagaacatttttaactgatgaaagcactaacaatg 128
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttgcacttagaaactcctattttgttagaacatttttaactgatgaaagcactaacaatg 328

                                                                       
Query: 129 gccccacccacagtaaaatttccctcccttttgaattttccattgtcagtaccattgcaa 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gccccacccacagtaaaatttccctcccttttgaattttccattgtcagtaccattgcaa 388

                                                                       
Query: 189 aatctagttccaattgtgccaatttcttcccacttccagacctggcattggtcagccttt 248
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 389 aatctagttccaattgtgccaatttcttctcacttccagacctggcattggtcagccttt 448

                                                                       
Query: 249 ttatttatgtgttttggcattatttctatctaagaaagctggaaattggcttgtctctct 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttatttatgtgttttggcattatttctatctaagaaagctggaaattggcttgtctctct 508

                                                                       
Query: 309 taaatccatagcttctgaaagatctcataatgaacccatccaaaaattcttactttccat 368
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 taaatccttagcttctgaaagatctcataatgaacccatccaaaaattcttactttccat 568

                                                                       
Query: 369 tattttgattagaaaaattcacagaaaggggtaaaataaaactgtgaatgttccttttct 428
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 569 tattttgattagaaaaattcacagaaaggggtaaaataaaaccgtgaatgttccttttct 628

                                                                       
Query: 429 caaggtaaaaatgtcaccagatgagagcatgaggttttattcggctttagtgtcctgaaa 488
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 629 caaggtaaaaatgtcaccagatgagagcatgaggttttattcagctttagtgtcctgaaa 688

                                                                       
Query: 489 tgttatttagttttgatgccaaattttataaatcatagagacatttatcattccattcca 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tgttatttagttttgatgccaaattttataaatcatagagacatttatcattccattcca 748

                                                                       
Query: 549 atagatcagcagaaacctcagggagaagcttttacattattgcaaaatttcaatggttgt 608
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 749 atagatcaccagaaacctcagggagaagcttttacattattgccaaatttcaatggttgt 808

                                                                       
Query: 609 ctcataataaaactttgtccactaagagactttcttgtttcctttcacatcagacatgct 668
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 cttataataaaactttgtccactaagagactttcttgtttcctttcacatcagacatgct 868

                                    
Query: 669 catattaactaacacaagctctgtc 693
           |||||||||||||||||||||||||
Sbjct: 869 catattaactaacacaagctctgtc 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_n04.g1 MSMg01no486_n04.g1 CHROMAT_FILE:
MSMg01no486_n04.g1 PHD_FILE: MSMg01no486_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:14 2005
         (672 letters)



>mm_chr5_60701242_60702313
          Length = 1072

 Score = 1284 bits (664), Expect = 0.0
 Identities = 670/672 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccgagaaatgaaagacatttttaattttttacgataaaattaaattggaaagttttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tcccgagaaatgaaagacatttttaattttttacgataaaattaaattggaaagttttaa 708

                                                                       
Query: 61  aagcaaaattctgccctaaatctgaaaatcaattttagtaatacttgaatatatgatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aagcaaaattctgccctaaatctgaaaatcaattttagtaatacttgaatatatgatttt 648

                                                                       
Query: 121 tgtgagaataatcaatatttattatattcatttcctttttccacttggatttagattgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tgtgagaataatcaatatttattatattcatttcctttttccacttggatttagattgct 588

                                                                       
Query: 181 ctactgctttggggcatatattcataagttgcatgacacaatctgaatcttggaaacccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctactgctttggggcatatattcataagttgcatgacacaatctgaatcttggaaacccg 528

                                                                       
Query: 241 aaaaggtacatagtaaatagaattgaacatgcctcttcgaaatcatctgtcagttagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaaaggtacatagtaaatagaattgaacatgcctcttcgaaatcatctgtcagttagtat 468

                                                                       
Query: 301 gaaaacttttaaaagtgttgatgtattgtgtctttagtggtacaacttatgagaaaagaa 360
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 467 gaaaacttttaaaagtgttgatgtattgtgtctttagtgatgcaacttatgagaaaagaa 408

                                                                       
Query: 361 tcaatagtaaacacaaaagaaaaagcctttacaaactatggttcaataattaccattacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tcaatagtaaacacaaaagaaaaagcctttacaaactatggttcaataattaccattacc 348

                                                                       
Query: 421 atttttggttcatatcttagactgctaatcattatatgatgttagatatttagattttag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atttttggttcatatcttagactgctaatcattatatgatgttagatatttagattttag 288

                                                                       
Query: 481 agtataagagatatatgacccacaagttaaacattcatcactaaatagttattaacgggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agtataagagatatatgacccacaagttaaacattcatcactaaatagttattaacgggt 228

                                                                       
Query: 541 tatacaatataaatgcctagaagaagtaaggccttcctgctctccagccaaggcttccgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tatacaatataaatgcctagaagaagtaaggccttcctgctctccagccaaggcttccgc 168

                                                                       
Query: 601 caaaccaagtcacccaccaggcaagacaaggactcccttccatgccataggctgccagac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 caaaccaagtcacccaccaggcaagacaaggactcccttccatgccataggctgccagac 108

                       
Query: 661 atctctcctcct 672
           ||||||||||||
Sbjct: 107 atctctcctcct 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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