Query= MSMg01no486_p10.b1 MSMg01no486_p10.b1 CHROMAT_FILE:
MSMg01no486_p10.b1 PHD_FILE: MSMg01no486_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:25 2005
(614 letters)
>mm_chr5_91916789_91917802
Length = 1014
Score = 1000 bits (517), Expect = 0.0
Identities = 574/613 (93%), Gaps = 34/613 (5%)
Strand = Plus / Plus
Query: 5 gaattccatatcttt---acctaacatagaaaacagagtagtcatggaaaattagactct 61
||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatct--gagac-taacatagaaaacagagtagtcatggaaaattagactct 261
Query: 62 aaatcaaagtttagcatcacctggaaatgaaaatgaggtgactttaagacaacaaaccca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaatcaaagtttagcatcacctggaaatgaaaatgaggtgactttaagacaacaaaccca 321
Query: 122 cagaaccttaaataagagccatgagacaaccttgccaagggcagtggtctccttggccta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cagaaccttaaataagagccatgagacaaccttgccaagggcagtggtctccttggccta 381
Query: 182 gcatacccaatcacttttgagtaattttacttaaatgtttaaggaaagagggtcctgcta 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acatacccaatcacttttgagtaattttacttaaatgtttaaggaaagagggtcctgcta 441
Query: 242 tttgatttacacatgttgatctccactaattcgcctcatatctataagaacatatctcaa 301
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tttgatttatacatgttgatctccactaattcgcctcatatctataagaacatatctcaa 501
Query: 302 atatctttgcactcttagtatgttatgctcacactgtaagtggtcaataagaatttttta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atatctttgcactcttagtatgttatgctcacactgtaagtggtcaataagaatttttta 561
Query: 362 gatacataactacaattttgtggatgaaaaactttctatcctatcagaaaaaacattaga 421
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gatatataactagaattttgtggatgaaaaactttctatcctatcagaaaaaacattaga 621
Query: 422 tatttccctggatgtatgacaaaagtctaaagaagaaaacacaaatggagaaccaagtga 481
||| |||||||||||||||||||||||||||||
Sbjct: 622 tat----------------------------gaagaaaacacaaatggagaaccaagtga 653
Query: 482 ggtagtcgtgcattttatattcaaagtcctgtgacagagaagggactcgtattcacatat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ggtagtcgtgcattttatattcaaagtcctgtgacagagaagggactcgtattcacatat 713
Query: 542 cagatccagctttgaaaagtgtggataacaaagctaggtgtggggtgctttcagatggcc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cagatccagctttgaaaagtgtggataacaaagctaggtgtggggtgctttcagatggcc 773
Query: 602 agtgatatacagg 614
|| ||||||||||
Sbjct: 774 agggatatacagg 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_p10.g1 MSMg01no486_p10.g1 CHROMAT_FILE:
MSMg01no486_p10.g1 PHD_FILE: MSMg01no486_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:26 2005
(658 letters)
>mm_chr5_92091014_92092072
Length = 1059
Score = 787 bits (407), Expect = 0.0
Identities = 432/441 (97%), Gaps = 3/441 (0%)
Strand = Plus / Minus
Query: 220 ttccttaagattagcaagcctcatacagaacattcagaacaaaacagggtgcgtggtcag 279
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 ttccttaagattagcaaacctcatacagaacattcagaacaaaacagggtgcgtggtcag 997
Query: 280 catgtttgctctgagccaagtcacttctctgtgtcaatgactggcaggcctgttacagca 339
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 996 catgtttactctgagccaagtcacctctctgtgtcaatgactggcaggcctgttacagca 937
Query: 340 acaatatggaatagctggcaggcatgggacaaaatggctacagctatgctggggggaggg 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 acaatatggaatagctggcaggcatgggacaaaatggctacagctatgctggggggaggg 877
Query: 400 gcagtcagattataatagtgtttatacttagaacaactgctggcttgaaattggatattt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gcagtcagattataatagtgtttatacttagaacaactgctggcttgaaattggatattt 817
Query: 460 ttactctctcatggttttcttttttctttctaagcttttaattttttttgttttgtttct 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ttactctctcatggttttcttttttctttctaagcttttaattttttttgttttgtttct 757
Query: 520 actttctcagaaaacaaccctccttgattttggatgtgccagtggcaatatctctctcta 579
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 756 actttctcagaaaacaaccctccttgattttgaatgtgccaatggcaatatctctctcta 697
Query: 580 cagagactctgttcctgc--atctggctgctacttagttgccacaggtgggcatgtgtcc 637
|||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||
Sbjct: 696 cagagactctgttcct-ctaatctggctgctacttaattgccacaggtgggcatgtgtcc 638
Query: 638 taagggattgagaaaatatgt 658
|||||||||||||||||||||
Sbjct: 637 taagggattgagaaaatatgt 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space: 679752
Effective search space used: 679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
