Query= MSMg01no488_e04.b1 MSMg01no488_e04.b1 CHROMAT_FILE:
MSMg01no488_e04.b1 PHD_FILE: MSMg01no488_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:07 2005
(632 letters)
>mm_chr5_45502965_45503996
Length = 1032
Score = 1118 bits (578), Expect = 0.0
Identities = 607/620 (97%), Gaps = 6/620 (0%)
Strand = Plus / Plus
Query: 13 gaattctttctttataggctactgtaaagaacaagtaggaaaatctacagaaggcagagc 72
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattctttcctcataggctactgtaaagaacaagtaggaaaatctacagaaggcagagc 272
Query: 73 cctaaaaatagttcccagcatttagtatgaattatgtaagtgtagcttaccaggactacg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cctaaaaatagttcccagcatttagtatgaattatgtaagtgtagcttaccaggactacg 332
Query: 133 tttttgcccacaaaagcaaggctgtatgtacaaagacaaataggccagatatttgtaaat 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttttgcccacaaaagcaaggctgtatgtacaaagacaaataggccagatatttgtaaat 392
Query: 193 agtgataactgataccacccacaagaaaacatcacactcacacacacacacacacacact 252
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agtgataactgataccacccacaagaaaacatcacactcacacacacacacacac----- 447
Query: 253 aactaactaactaaatcattaatgtaattgtagtagagcagatttttcactaaattctct 312
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 448 -actaactaactaaatcattaatataattgtagtagagcagatttttcactaaattctct 506
Query: 313 gtgaagtagtacttgtatttagccttggaccctggatgacagggctaggctggagaatta 372
|||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 507 gtgaagtagtacatgcatttagccttggaccctggatggcagggctaggctggagaatta 566
Query: 373 ggtgaaatgggagaaaaataagatgccttagctgattaaaaataacacaggtgagtttta 432
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggtgaaatgggagaaaaataagctgccttagctgattaaaaataacacaggtgagtttta 626
Query: 433 agaaaaattaactttacatcttcgaggtcagtcaataacatgataaatactcaaactgga 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agaaaaattaactttacatcttcgaggtcagtcaataacatgataaatactcaaactgga 686
Query: 493 accaaactgtctaatggcaatgcaatagtttcctataagaaggctatataagagaacaga 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 accaaactgtctaatggcaatgcaatagtttcctataagaaggctatataagagaacaga 746
Query: 553 atcagtgatcacatgtataatcatgtgaaatgaatgggctatcctgcatgacttctaagt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 atcagtgatcacatgtataatcatgtgaaatgaatgggctatcctgcatgacttctaagt 806
Query: 613 ttggggaactctacatttct 632
||||||||||||||||||||
Sbjct: 807 ttggggaactctacatttct 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_e04.g1 MSMg01no488_e04.g1 CHROMAT_FILE:
MSMg01no488_e04.g1 PHD_FILE: MSMg01no488_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:07 2005
(624 letters)
>mm_chr5_45682006_45683029
Length = 1024
Score = 1183 bits (612), Expect = 0.0
Identities = 621/624 (99%)
Strand = Plus / Minus
Query: 1 atctgtgggtctaggtagcagaaaggagaagccaggaggctacaggcttgtggtgacgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 atctgtgggtctaggtagcagaaaggagaagccaggaggctacaggcttgtggtgacgca 765
Query: 61 agagttgtttcaggtcactgaaagagatgactccactactgtgggggaagggaaagcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 agagttgtttcaggtcactgaaagagatgactccactactgtgggggaagggaaagcttg 705
Query: 121 agggacaccccagttgaccttgctactgtcccacagtatgctgctttcccacggcagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agggacaccccagttgaccttgctactgtcccacagtatgctgctttcccacggcagaca 645
Query: 181 attccccctgataggggtaggtgccaggcagggcttcttaaattgggatgaagtggttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 644 attccccctgataggggtaggtgccaggcagggcttcttaaattgggatgaagcggttta 585
Query: 241 gatgtttatggagatttccaaaatgaaatcatgttacacagtgagtaattttgcccaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gatgtttatggagatttccaaaatgaaatcatgttacacagtgagtaattttgcccaagt 525
Query: 301 atgtatgtgttcatgttttctttctcagaaacctttccctacctttgcttgggtagcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atgtatgtgttcatgttttctttctcagaaacctttccctacctttgcttgggtagcttc 465
Query: 361 tgtacctaattgtcacaagtgcgatgcttttaaatagcagaaatgcattctccagcaagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgtacctaattgtcacaagtgcgatgcttttaaatagcagaaatgcattctccagcaagt 405
Query: 421 ctagagaaagtatgacttccaggggccagcaggttctattttttttcctggagactgagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctagagaaagtatgacttccaggggccagcaggttctattttttttcctggagactgagg 345
Query: 481 tagaaattttcctgtgctcctcaacaacagaaggctccaggaatccccacagacacatca 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tagaaattttcctatgctcctcaacaacagaaggctccaggaatccccacagacacatca 285
Query: 541 ctcactccaacttctgcctctctcttcccatgatttttctccccctgacccctgggtgtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctcactccaacttctgcctctctcttcccatgatttttctccccctgacccctgggtgtc 225
Query: 601 tctttgtctcaaatctctttctct 624
||||||||||||||||| ||||||
Sbjct: 224 tctttgtctcaaatctccttctct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
