Query= MSMg01no488_g24.b1 MSMg01no488_g24.b1 CHROMAT_FILE:
MSMg01no488_g24.b1 PHD_FILE: MSMg01no488_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:22 2005
(637 letters)
>mm_chr5_147722831_147723866
Length = 1036
Score = 1091 bits (564), Expect = 0.0
Identities = 600/612 (98%), Gaps = 1/612 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctcctgttcaatggacacttttccagtcagttcttcctcagaagaggggaact 63
||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctcctgatgaatggacacttctccagtcagttcttcctcagaagaggggaact 263
Query: 64 gttcagtcacactgctcctcccagagcctaacaaaggcagacattggtcctagatgaggc 123
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 264 gttcagtcacactgttcctcccagagcctaagaaaggcagacattggtcctagatgaggc 323
Query: 124 ctgtcgcctgtgcatgaaacggttgaaggcagtatattcagcagagtcagaaggaggtga 183
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgtcgcctgtgcatgaaacagttggaggcagtatattcagcagagtcagaaggaggtga 383
Query: 184 gggagctggccttgggcacctaaaaggaaactgctgtttgggttgaagtttgacctcgcc 243
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 384 gggagctggccttgggcacctaaa-ggaaactgctgtttgggttgaagtttgacctcacc 442
Query: 244 aggtgcctggagagtagcaaccctcgactgtgtggccaagtggcttcaccacgcacctgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggtgcctggagagtagcaaccctcgactgtgtggccaagtggcttcaccacgcacctgg 502
Query: 304 gaccaccctgtgtaattggacgagttcgttaccgttaccgtttccagacatttccaaatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaccaccctgtgtaattggacgagttcgttaccgttaccgtttccagacatttccaaatg 562
Query: 364 tcatgatgatgttgtgcatcaagggagcagagctgtagtgaaggctgtggctgagctagg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcatgatgatgttgtgcatcaagggagcagagctgtagtgaaggctgtggctgagctagg 622
Query: 424 gaagcaggactctgctacaagtactgtgtttgttgaatgactacttgtaaataagacacc 483
||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct: 623 gaagcaggactctgctacaagcactgtgtttgttgaatgaatacttgtaaatgagacacc 682
Query: 484 atccatctgctgccatctactgagcactcactctgggccagccactctgctctctcctac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atccatctgctgccatctactgagcactcactctgggccagccactctgctctctcctac 742
Query: 544 aaaattccattccctttcgacaattacacacacacacacacacacacacacacacacaca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aaaattccattccctttcgacaattacacacacacacacacacacacacacacacacaca 802
Query: 604 cacacacacaca 615
||||||||||||
Sbjct: 803 cacacacacaca 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_g24.g1 MSMg01no488_g24.g1 CHROMAT_FILE:
MSMg01no488_g24.g1 PHD_FILE: MSMg01no488_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:22 2005
(652 letters)
>mm_chr5_147862066_147863111
Length = 1046
Score = 793 bits (410), Expect = 0.0
Identities = 457/476 (96%), Gaps = 8/476 (1%)
Strand = Plus / Minus
Query: 178 accaggcgcaagggtttcatgcaggaggacataatcagttgtgtcgagtcttgcagacaa 237
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1046 accaggcgcaagggtttcatgcaggaggacatagtcagttgtgtcgagtcttgcagacaa 987
Query: 238 ggccagtcttataagattaggactgggaattaagcagtggatttagcaacgtggaattca 297
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 ggccagtcaaataagattaggactgggaattaagcagtggatttagcaacgtggaattca 927
Query: 298 ctggtgaccttgacacagagtttcgatggggaaagcgacagctcctgaagtataaagttc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 ctggtgaccttgacacagagtttcgatggggaaagcgacagctcctgaagtataaagttc 867
Query: 358 aagagggagacgcaggagagcagccagggcagaggcagttctgtgagaaactgcaccatt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aagagggagacgcaggagagcagccagggcagaggcagttctgtgagaaactgcaccatt 807
Query: 418 tggggtaggcagaaatcacgcactctgggaggaaatgagagtatgagaggtgccgacctc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tggggtaggcagaaatcacgcactctgggaggaaatgagagtatgagaggtgccgacctc 747
Query: 478 taacccctttgacgtcctcatcccctccacagcacgaaaacagactccccctcatataaa 537
||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 746 taatccctttgccgtcctcatcccctccacagcacg------gactccccctcatataaa 693
Query: 538 gctttattacatatatctctggatattcttaggggcctcctgtttaatatcccatccc-t 596
||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |
Sbjct: 692 gctttattacatatatctctggatactcttaggg-cctcctgtttaatatcctatcccct 634
Query: 597 ggctaactctcttcaactccttcacgtgaagaaagttcatgtctcagtaacgtcga 652
|||||||||||||||| | |||||| ||||||||||||||||||||||||| ||||
Sbjct: 633 ggctaactctcttcaatttcttcacatgaagaaagttcatgtctcagtaacttcga 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1046
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1036
Effective search space: 665112
Effective search space used: 665112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
