BAC Information

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BAC

Clone NameMSMg01-488P04
Chromosome5 (Build37)
Map Location 152,219,238 - 152,219,635
singlet/doubletsinglet
Overlap geneLOC100042166
Upstream geneFry, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175
Downstream geneEG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488P04.T7 (MSMg01no488_p04.b1)MSMg01-488P04.TJ (MSMg01no488_p04.g1)
ACCAG567550AG567551
length709757
length of high quality
(start - end)
398 (306 - 703)384 (326 - 709)
definitionCHROMAT_FILE: MSMg01no488_p04.b1 PHD_FILE: MSMg01no488_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:00 2005CHROMAT_FILE: MSMg01no488_p04.g1 PHD_FILE: MSMg01no488_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTAGTCGATACAAGATCCGCGGAATTCAAGGTTTGCTAAACATA
TGTAGAGAGATGCTGACTGAAAATAAAAACAAAAACAAAAATAAAAACAA
CACAAGAGTAACAAAATATATCAGGCGATAGCTATAAATGTCACCAAAGG
AAATTAAATAAATAAGTCACTGGAAAGATTCTACATGTTCATGGATTGGA
GGCTTACTATGGCTAAGATACATTATTCAAATTGATATGCAAATTTTTTA
CAATCCCTATCAAAATCTGGACTGTTTATTCTGCAGAAATTTAGAGACAT
GNTTAAGAATTCACAGAGAAATGAAAGCGAGTCATAGTCAAAGTGGTCTC
GAGGAAGGACAACATTAAAGCATGTGAACTTCCCAACTTCAAAGCTTGTT
ACAGACCCATCATGAAGGGCACAAAAACCAATGGAATATAATTGACGCTC
CAGAAACAAACCTACTCTGCAGACTTATCTGTGATCAGTTTATTTTGAGG
AAGGCTCCAAGTCCATTTGATAGAGAATTACATTTTCAATAAAGGTAGTG
GGTCATATGCTAAAGAATGAAGTTATAAAAAGAGAACAAATACAGAAATG
TAGAAGCTAGTATAATAACACTCTCTATAAGGTCAGAAGAATAAATCCTT
GATGGGTTACATGGAGCAGGATTTCTTAGATATGCTATGAAAGCACATGT
CAAAAACAN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCAACATTCTCACCTGAGGAATACCAAATGGCTGA
GAAGCACCTGAAAAAAATGCTCAGCACCCTTAATCATCAGAGAAATGCAA
ATCAAAACAACCCTGATATTCCATCTCACACCAGTCAGAATGGCTAAGTT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTTCTTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCAGTTCCTCTTTTTTATTGGACATAGTACTACCGGAGGATC
CTGCAATATCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGTTATTAAAAAAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACCCAATCACAAAAGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAGAAATTTAGAATACCCAAGATATAAGATACAATTTG
CTAAACGCATGANACTCAAGAAGAACGAAGATCAAAGTGTGGACACTTTT
CCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_p04.b1 MSMg01no488_p04.b1 CHROMAT_FILE:
MSMg01no488_p04.b1 PHD_FILE: MSMg01no488_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:00 2005
         (398 letters)



>mm_chr5_152219038_152219835
          Length = 798

 Score =  762 bits (394), Expect = 0.0
 Identities = 397/398 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaattcacagagaaatgaaagcgagtcatagtcaaagtggtctcgaggaaggacaacat 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 agaattcacagagaaatgaaagcgagtcatagtcaaagtagtctcgaggaaggacaacat 260

                                                                       
Query: 61  taaagcatgtgaacttcccaacttcaaagcttgttacagacccatcatgaagggcacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagcatgtgaacttcccaacttcaaagcttgttacagacccatcatgaagggcacaaa 320

                                                                       
Query: 121 aaccaatggaatataattgacgctccagaaacaaacctactctgcagacttatctgtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaatggaatataattgacgctccagaaacaaacctactctgcagacttatctgtgat 380

                                                                       
Query: 181 cagtttattttgaggaaggctccaagtccatttgatagagaattacattttcaataaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtttattttgaggaaggctccaagtccatttgatagagaattacattttcaataaagg 440

                                                                       
Query: 241 tagtgggtcatatgctaaagaatgaagttataaaaagagaacaaatacagaaatgtagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtgggtcatatgctaaagaatgaagttataaaaagagaacaaatacagaaatgtagaa 500

                                                                       
Query: 301 gctagtataataacactctctataaggtcagaagaataaatccttgatgggttacatgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctagtataataacactctctataaggtcagaagaataaatccttgatgggttacatgga 560

                                                 
Query: 361 gcaggatttcttagatatgctatgaaagcacatgtcaa 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaggatttcttagatatgctatgaaagcacatgtcaa 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)