TTTTTTTCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGAATTTTCGATTCATGATAGAAATAATTAATGGGAT
AGACTTTATTAAAAATTTAAATTGTCTACTCTATGTAAAACTTTGTAAGG
AATAACAGATAAAGCACAGATTGAGAACATGTATTTGCAGAAAATACATC
TGGCAATGGACTGTCATCCCAAATGTATAAAGCAAAAAGCAGATACTAAC
CTAAGAAAAAGGAGCCTAATACATCAGATTATTTTCTAAAACCGGATGAA
TCTGGAGTAAGCTGCTATGTTAAGTAAAATTATCCAGACATGTAAAAATG
AATATCATATGATCTCACTTGAATAATGAGTCAAGCAGATGTGTCTGACC
TTCTGTCACTGTCAATTGATACTATTATCTACAAAGATCATAGTTGGACA
GGGTGAAGTTTACTTCCGTAAAAGAATAATAAAAGATCTCTCATTAAAGT
AAGTTTAGAATTCATGGATATCCTTGACTGCCTGTGGTAACATAGCAGCA
GTTTAGATATGCTTGGAAGAGGCATTGTCACAGAAGATAGAATGGTGGTT
TCTAAGGAGTACAATATGGAGAAAATATAACCATCTTAGTAAATGGGTCT
CTGGCTGCAATGTATCAGAAGATGGCCTAGTCTGCCATTATTGGAAAGAG
AGCCCATTGGTCTTGCACACTTTATATGCCTC

AACCCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTAT
CATGAATGGGTGTTGGATCTTGTCGAATGCTTTTTCTGCATCTAACGAGA
TGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTATGTTG
ATGGATTTCCGTATATTAAACAATTCCTGCATCCCTGGAATAAAACCTAC
TTGGTCAGGATGGATGATTGTTTTGATGTGTTCTTGGATTCAGATAGCAA
GAATTTTATTGAGTACTTTTTTATCGATATTCATAAGGGAAATTGGTCTG
ACGTTCTCTATCTTCGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAAT
TGTGGCTTCATAGAATGAGTTGGGTAGAGTACCTTCTTCTTCTATTTTGT
GGAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGTGCGATCGG
ACTCTGAACTAAACCCATCTGGTCCTGGCCTTTTTTTTTTTTTTTGTTGG
GAAACCTTTAATGACTGCTTCTATTTCTTTAGAAGATATGGGACTGTTTA
GATCGTTAACTTGATCCTGGTTTAACTTTGGTACCTGGCATCCTGGTATC
TGTCTAGAAATTTGTCCATTTCCGCCAGGGTTTCCAGTTTTGTTGAGATA
GCCTTTTGTACAAAGATCG

Query= MSMg01no489_c04.b1 MSMg01no489_c04.b1 CHROMAT_FILE:
MSMg01no489_c04.b1 PHD_FILE: MSMg01no489_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:15 2005
         (605 letters)



>mm_chr5_63619573_63620577
          Length = 1005

 Score = 1048 bits (542), Expect = 0.0
 Identities = 575/586 (98%)
 Strand = Plus / Plus

                                                                       
Query: 20  gattcatgatagaaataattaatgggatagactttattaaaaatttaaattgtctactct 79
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gatttatgatagaaataattaatgggatagactttattaaaaatttaaattgtctactct 279

                                                                       
Query: 80  atgtaaaactttgtaaggaataacagataaagcacagattgagaacatgtatttgcagaa 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atgtaaaactttgtaaggaataacagataaagcacagattgagaacatgtatttgcagaa 339

                                                                       
Query: 140 aatacatctggcaatggactgtcatcccaaatgtataaagcaaaaagcagatactaacct 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aatacatctggcaatggactgtcatcccaaatgtataaagcaaaaagcagatactaacct 399

                                                                       
Query: 200 aagaaaaaggagcctaatacatcagattattttctaaaaccggatgaatctggagtaagc 259
           ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 400 aagaaaaaggagcctaatacaacagattattttctaaaaccggatgaatctgtagtaagc 459

                                                                       
Query: 260 tgctatgttaagtaaaattatccagacatgtaaaaatgaatatcatatgatctcacttga 319
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 460 tgctatgttaagtaaaattatccagacatgtaaaaattaatatcatatgatctcacttga 519

                                                                       
Query: 320 ataatgagtcaagcagatgtgtctgaccttctgtcactgtcaattgatactattatctac 379
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 520 ataatgagtcaagcagatatgtctgaccttctgtcattgtcaattgatactattatctac 579

                                                                       
Query: 380 aaagatcatagttggacagggtgaagtttacttccgtaaaagaataataaaagatctctc 439
           ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 580 aaagatcatagttagacagggtgaagtttacttccataaaagaataataaaagatctctc 639

                                                                       
Query: 440 attaaagtaagtttagaattcatggatatccttgactgcctgtggtaacatagcagcagt 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 attaaagtaagtttagaattcatggatatccttgactgcctgtggtaacatagcagcagt 699

                                                                       
Query: 500 ttagatatgcttggaagaggcattgtcacagaagatagaatggtggtttctaaggagtac 559
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 700 ttagatatgcctggaagaggcattgtcacagaagatagaatggtggtttctaaggagaac 759

                                                         
Query: 560 aatatggagaaaatataaccatcttagtaaatgggtctctggctgc 605
           |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 760 aatatggagaaaatataaccatcttagtaaatgggtctctagctgc 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)