NNNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTTAGCTCTGAGCACCATTTTTTAATGGGGTTA
TTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTACATATATTGGATAT
TAGTCCCCTGTCTGATTTAGGATAGGTAAAGATCTTTTCCCAATCTGTTG
GTGGCCTTCTTATCTTATTGACAGTGTCATTTGCCTTGCAGAAGCTTTGC
AGTTTCATGAGGTCCCATTTATCTATTCTTGATCTTACAGCACAAGCCAA
TGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATATTTGAGACTTT
TCCCCACTTTCTCCTCTATAAGTTTCACTTTCTCTGGTTTTATGTGGAGT
TCCTTGATCCACTTAAATTTGACCTTAGTACAAGGAGATAGGATTGGATC
AATTCACATTCTTCTACATGATAACCACCAGTTGTGTCAGTACCATTTGT
TGAAAATGCTGTCTTTTTTCCACTGGATGGATTTAGCCTCCTTGTCAAAG
ATCAAGTGACCATAGTTGTGTGTGGGTTCATTTCTGGAGGGCATCATCCT
GAGTGAGGTACCTCAATCACAAAAGAACTCAAATGATAAGTTCTCACTGA
TAAGTGGATATTAGCCTAGAAACTTAGAATACCCAAGATATAAGATACAA
TTTGCAAAACACATGAAACTCAAGAACAGCAAAGACCA

NNTTTTCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTCTAAAAGAGC
TGCAACTAAGCAGATGAACATTTCTGGAAATATTTGCCACTGGGATGACC
CCATGGCATCATTCGTGTTGACTACACCTGTAGAAGCTTTGTTATTACTA
AATGAAGCCATCTGGAGTCAGTCATCATAGTCCATCCAAATGACCCTGTA
GTACTCACTGCCAGGAGAAAGTCTGCAGTTACCAAAGTCATCCTACAAAA
CTGACATGGTAAACTATACTAATACATGAATAATTCTTAATGTAGGAGCA
TGGTAGGTATGGAGGAACAAAGTAAGAGAGCTCCTCCAGGGATACACACT
AGCTTTATATCTCTAGACTGTGCTGGTTACCATTTGTCAAGTTGACACCA
ACTAGAGTAATCTGGAAGAGAAAGTAACAACTGAGTAGGAAAATTAAGAG
AGGGAAAAAGTTTGAAAACACACAGAGAGAGAGAGGGAGGGAGGGAGAGA
GAGAGAGAGACAGAGAGACGGAGAGACAGAGAGAGACAGAGACAGACAGA
GAGACAGAAAAACAAACAGAGAATGTCAATTGAGGAGTTGCCTCCACCAG
ATTGCCCTAAGTGGTCATCTCTAGCATATTTTCTTAATTGCTGATAAACG
TGAAAGGGCCTAGCCCATTGGACAGTTCCAACCCTTGGGA

Query= MSMg01no489_f01.g1 MSMg01no489_f01.g1 CHROMAT_FILE:
MSMg01no489_f01.g1 PHD_FILE: MSMg01no489_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:30 2005
         (562 letters)



>mm_chr5_41465593_41466554
          Length = 962

 Score = 1048 bits (542), Expect = 0.0
 Identities = 558/564 (98%), Gaps = 2/564 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtctaaaagagctgcaactaagcagatgaacatttctggaaatatttgccactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtctaaaagagctgcaactaagcagatgaacatttctggaaatatttgccactgg 260

                                                                       
Query: 61  gatgaccccatggcatcattcgtgttgactacacctgtagaagctttgttattactaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgaccccatggcatcattcgtgttgactacacctgtagaagctttgttattactaaat 320

                                                                       
Query: 121 gaagccatctggagtcagtcatcatagtccatccaaatgaccctgtagtactcactgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gaagccatctggagtcagtcatcatagtccatccaaatgaccctggagtactcactgcca 380

                                                                       
Query: 181 ggagaaagtctgcagttaccaaagtcatcctacaaaactgacatggtaaactatactaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagaaagtctgcagttaccaaagtcatcctacaaaactgacatggtaaactatactaat 440

                                                                       
Query: 241 acatgaataattcttaatgtaggagcatggtaggtatggaggaacaaagtaagagagctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatgaataattcttaatgtaggagcatggtaggtatggaggaacaaagtaagagagctc 500

                                                                       
Query: 301 ctccagggatacacactagctttatatctctagactgtgctggttaccatttgtcaagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccagggatacacactagctttatatctctagactgtgctggttaccatttgtcaagtt 560

                                                                       
Query: 361 gacaccaactagagtaatctggaagagaaagtaacaactgagtaggaaaattaagagagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacaccaactagagtaatctggaagagaaagtaacaactgagtaggaaaattaagagagg 620

                                                                       
Query: 421 gaaaaagtttgaaaacacacagagagagagagggagggagggagagagagagagaga--c 478
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |
Sbjct: 621 gaaaaagtttgaaaacacagagagagagagagggagggagggagagagagagagagagac 680

                                                                       
Query: 479 agagagacggagagacagagagagacagagacagacagagagacagaaaaacaaacagag 538
           |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 agagagacagagagacagagagagacagagacaggcagagagacagaaaaacaaacagag 740

                                   
Query: 539 aatgtcaattgaggagttgcctcc 562
           ||||||||||||||||||||||||
Sbjct: 741 aatgtcaattgaggagttgcctcc 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)