Query= MSMg01no489_f05.b1 MSMg01no489_f05.b1 CHROMAT_FILE:
MSMg01no489_f05.b1 PHD_FILE: MSMg01no489_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:31 2005
(627 letters)
>mm_chr5_132475319_132476345
Length = 1027
Score = 1129 bits (584), Expect = 0.0
Identities = 614/624 (98%), Gaps = 2/624 (0%)
Strand = Plus / Minus
Query: 5 gaattcacttgtatg-ctcattaattcaatatatgagataacatgttcttattgtctgtc 63
||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gaattcacttgaatgtc-cattaattcaatatatgagataacatgttcttattgtctgtc 769
Query: 64 ttactaatggcagctcagtagcaaaatatatttttaaggttttatgttattccaatttta 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttactaatggcagctcagtagctaaatatatttttaaggttttatgttattccaatttta 709
Query: 124 ttttttgcagtactgctaagtgaacatggttttagaacacagatacttatgtgaaacaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ttttttgcagtactgctaagtgaacatggttttagaacacagatacttatgtgaaacaag 649
Query: 184 ccaagtcctttattaagggatagcttgcctccatttaaccattctttattggatcctctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ccaagtcctttattaagggatagcttgcctccatttaaccattctttattggatcctctc 589
Query: 244 acctgtgctttgtatagctagacatggcgtagagaaagataaaatgatgggctttaatat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 acctgtgctttgtatagctagacatggcgtagagaaagataaaatgatgggctttaatat 529
Query: 304 tgtttgtgtgtggttcatttactcagtgatggacagaaatttcatccttgtagccatgtg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgtttgtgtgtggttcatttactcagtgatggacagaaatttcatccttgtagccatgtg 469
Query: 364 ggtgggtgctttagttatctaggtctctaatggaaaacgctcagcgcttgtgctttctga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggtgggtgctttagttatctaggtctctaatggaaaacgctcagcgcttgtgctttctga 409
Query: 424 ctaaactgacttaaaacaggtaatggagcctacctcacatttctgtcttccttcagagta 483
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 408 ctaaactgacttaaaacaggtaatggagcctacctcacatttctggcttccttcagaata 349
Query: 484 gctgtttgctgattgtcaggtaggatgttgttgccccaagctgagtgatgtagatggatg 543
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 348 gctgtttgctgattgtcaggtaggatgttgttgccccgagctgagtgatgtagatggatg 289
Query: 544 aaggacactgggtagtcagaggaagagagcaatggcagccacggggaatccttttttctt 603
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct: 288 aaggacactgggtagtcagaggaagagagcaatggcagtcacggtgaatcctttttcctt 229
Query: 604 ccttctagctacatctctgcttgc 627
||||||||||||||||||||||||
Sbjct: 228 ccttctagctacatctctgcttgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_f05.g1 MSMg01no489_f05.g1 CHROMAT_FILE:
MSMg01no489_f05.g1 PHD_FILE: MSMg01no489_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:31 2005
(532 letters)
>mm_chr5_132312547_132313478
Length = 932
Score = 859 bits (444), Expect = 0.0
Identities = 522/580 (90%), Gaps = 50/580 (8%)
Strand = Plus / Plus
Query: 1 caggatcagtgagtaaccctgtttcaaaagttaaggttgagagcaatagaggaaagcact 60
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 155 caggatcagtgagtgaccctgtctcaaaagttaaggttgagagcaatagaggaaagtact 214
Query: 61 gacgtggcctatgctctttatccatgtttacatgggcaagtgtacacaggcatgtgtaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 215 gacgtggcctatgctctttatccatgtttacatgggcaagtgtacacaggcatgt--aca 272
Query: 121 cacacacacacacacacacacacacacacaca---------------------------- 152
||||||||||||||||||||||||||||||||
Sbjct: 273 cacacacacacacacacacacacacacacacacacacacagagagagagagagagagaga 332
Query: 153 --------------------gaatgttcttccagtccagcttatcaaggaagagtggaac 192
||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gagagagagagagagagagagaatgttcttccagtccagcttatcaaggaagagtggaac 392
Query: 193 acaggagtggagaacatggaaatgcctcccctcttccccccaacagaagtttggaaaggg 252
|||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct: 393 acaggagtggagaacatggagacgcctcccctctttcccccaacagaagtttggaaaggg 452
Query: 253 cacttgctctacaactcttgtactggtagagacattctacaggtttcaaagcagatgaac 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cacttgctctacaactcttgtactggtagagacattctacaggtttcaaagcagatgaac 512
Query: 313 tctatctatacagcacagaacttggcctaaagacaccagaactcagtgacttacattctc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tctatctatacagcacagaacttggcctaaagacaccagaactcagtgacttacattctc 572
Query: 373 ttcgaagtatgcaagtgaccatcttgaagccaaattaatagtgggaaaaaccagtgtcta 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttcgaagtatgcaagtgaccatcttgaagccaaattaatagtgggaaaaaccagtgtcta 632
Query: 433 cactaagacaaaagtgtagttatgttaagatccaaagcaacattatgaactaaccagtat 492
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cactaagacaaaagtgtagttatgttaagatccaaagcaacattatgaactaaccagtac 692
Query: 493 cccggagctcttgactctagctgcatatgtatcaaaagat 532
||| ||||||||||||||||||||||||||||||||||||
Sbjct: 693 ccctgagctcttgactctagctgcatatgtatcaaaagat 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
