BAC Information

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BAC

Clone NameMSMg01-489P10
Chromosome5 (Build37)
Map Location 58,959,681 - 58,959,900
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666465, Pcdh7, LOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489P10.T7 (MSMg01no489_p10.b1)MSMg01-489P10.TJ (MSMg01no489_p10.g1)
ACCAG568315AG568316
length746724
length of high quality
(start - end)
69 (234 - 302)226 (78 - 303)
definitionCHROMAT_FILE: MSMg01no489_p10.b1 PHD_FILE: MSMg01no489_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:24 2005CHROMAT_FILE: MSMg01no489_p10.g1 PHD_FILE: MSMg01no489_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCTTTTTAATATTCGCGGTCGCCTAAACGACTCACTCTTCGGAGAGG
ATCCGCGNGAATCTCTTTTTACGAAACTCAAAGGGCTGACAAGCACCTTA
AGAAATGTTTAACATCCTTAGCTATCAGGGAAATGCAAATCACAATAACT
CTGCAATTACACCTCACAGAAGTCAGAATGTTTAAGAGAAAAATCTCAGG
TGACAGCATATACTGGCAAGGATGTAGCGAAAGAGGAACACTCCTTCTTT
GCTGGTGGGATTGCAAGCTGGTACAATAACTTGGGAAGTCAGTGTTGCTG
TTTCTCAGAAAATGCAACATAGTATTACCTGTAGGACCCAACTATACTGC
TCCTGGGCATATACTCAAAATATGTCCCAACATGCATTAAGGACACATGC
TCCACTATGTTCATAGTAGCCTTATTTATATATAGCCAGAAGCTGGAAAC
AACCCATATGCCTCTCACTACAGGATTGGATGCACACCATGTGGCAACAT
ATCTATTTTATTTTTAACTACTATTGCTGTCTTTATGACTCTAACATAAT
GCGAATGCGCAGTTAGTAGTGACCATGATGATGTTTCCATCCTCTACTTC
AATTCTCCTGGTTACTAATCTCCCTACTTCTTGATTCTATCTTGTTCATA
TACATCTATTTCACTGTATTTTATTTACTATGAGTACCCTGGTACCCTTT
TTTTTTTTTTTTCATTACTCTTTATCTACCTCTATTTTTATTTCTT
AAAAATTCTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGACAAAAAGAATTCTCTGCTTTGTGCTTCTGGGA
GGTTCTCAGCTTTCTGGGGGAGAGGGAAGGTTGGGAGACTAGGAGAATTA
GAGAGAAGTGTGGTTGGGATGTATTGCATGAGATAATAAAATAAAAAAAA
AGAATAAGAATATATGAAAATGCCGGGCGTTGGTGGCGAACGCCTTTTTT
TTTTCACTTGGAAGGCAAAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCT
TGGCCTACAAAGTTTTCTTCAGTTCAGCCAGGGCCANACAGAGAAACCCT
GGCNCAATTTTTTTTCCCCCCCACAAACAAACGAACAAACAAAATATATA
TATATGAAAACATACTAGCCACCCCATATTCTGTTCCTAGATGGAAGCTG
AGATATGCATACATTCTAAGTTTCAGATTGCAAAATAATGCAAACATGTG
TAAAATGAATTTGTGCTTCGATTTGAAATTGATATACCAAACTAGGCTGA
TTTTACTGAGGTAACGTTTTTTAAACATTGTGCCAATTGGGATTATATCA
TTGAACAACGCATATAGCTCCAACCGTTAGTTTTCCTTTCTTTTTTTTCG
ACCCCCCGGGTGTCTTTATGGGTTTGCTTTTAGAGATTATTTCACCTTTT
TTCTTCCTAATGATAGGTATGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_p10.g1 MSMg01no489_p10.g1 CHROMAT_FILE:
MSMg01no489_p10.g1 PHD_FILE: MSMg01no489_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:24 2005
         (226 letters)



>mm_chr5_58959478_58960103
          Length = 626

 Score =  302 bits (156), Expect = 1e-86
 Identities = 204/228 (89%), Gaps = 17/228 (7%)
 Strand = Plus / Plus

                                                                       
Query: 4   tctgctttgtgcttctgggaggttctcagctttctgggggagagggaaggttgggagact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tctgctttgtgcttctgggaggttctcagctttctgggggagagggaaggttgggagact 263

                                                                       
Query: 64  aggagaattagagagaagtgtggttgggatgtattgcatgagataataaaataaaaaaaa 123
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 264 aggagaattagagagaagtgttgttgggatgtattgcatgagataataaaataagaaaaa 323

                                                                       
Query: 124 agaataagaatatatgaaaatgccgggcgttggtg--gcgaacgccttt--tttttttc- 178
           ||||||||||||| ||||||  ||||| |||||||  ||  ||||||||  |      | 
Sbjct: 324 agaataagaatatgtgaaaacaccgggagttggtgctgc--acgcctttaat------cc 375

                                                           
Query: 179 ----acttggaaggcaaaggcaggcagatttctgagttcaaggccagc 222
               |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cagcacttcgaaggcaaaggcaggcagatttctgagttcaaggccagc 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)