Query= MSMg01no490_b14.b1 MSMg01no490_b14.b1 CHROMAT_FILE:
MSMg01no490_b14.b1 PHD_FILE: MSMg01no490_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:35 2005
(577 letters)
>mm_chr5_99074933_99075909
Length = 977
Score = 410 bits (212), Expect = e-118
Identities = 339/442 (76%), Gaps = 94/442 (21%)
Strand = Plus / Plus
Query: 141 tctgagcacttcccatgaaagtctgaagactggagttcaggtgcccagaatgcacagaaa 200
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tctgagcacttcccatgaaactctgaagactggagttcaggtgcccagaatgcacagaaa 568
Query: 201 agccatgcagtaagataacaacccttataacccaagtgcttttttt-----gtagagaca 255
||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct: 569 agccatgcagtaagataacaacccttataacccaagtgc-----ttaggaggcagagaca 623
Query: 256 caggggatctccagggcaagctggctagctgaactgaaattgaggactcgcattccactg 315
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 624 caggggatctccagggcaagctcgctagctgaactgaaattgaggactcgcattccactg 683
Query: 316 agagaccttgccttagtgtacacaatggagagtggttaggatttggagtcttcacaggca 375
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 684 agagaccttgtcttagtgtacacaatgaagagtggttaggatttggagtcttcacaggca 743
Query: 376 tacacacacacacacacacacacacacacacacacacacactcacacacacacactcact 435
|||||
Sbjct: 744 tacac------------------------------------------------------- 748
Query: 436 cacagacacacacacacacacactcacagacacacacacacacacacatgtatacacatg 495
|||||||||||||||||||||||||||||||
Sbjct: 749 -----------------------------acacacacacacacacacatgtatacacatg 779
Query: 496 tgcacctacatagaggtaggtatcatttacatcacacaatcagaaaatatttttaaagta 555
|| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 780 tgtacctacatagaggtaggtatcatttacaccacacaatcacaaaatatttttaaagta 839
Query: 556 tggaaaaggtttctcattaaac 577
|||||||||||||||||||||
Sbjct: 840 cggaaaaggtttctcattaaac 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_b14.g1 MSMg01no490_b14.g1 CHROMAT_FILE:
MSMg01no490_b14.g1 PHD_FILE: MSMg01no490_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:35 2005
(675 letters)
>mm_chr5_99195977_99197051
Length = 1075
Score = 1091 bits (564), Expect = 0.0
Identities = 636/675 (94%), Gaps = 29/675 (4%)
Strand = Plus / Minus
Query: 1 ttccattttggctaggtttgctggccagtgaactctcaagatctgctggtctccacattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 755 ttccattttggctaggtttgctggccagtgaactctcaagatctgctggtctccacaatg 696
Query: 61 gtacaagtatgtatatgtgtgcatgtgtgcatgtgtgcatgtgtgcatgtgtgcatgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 695 gtacaagtatgtatatgtgtgcatgtgtgcatgtgtgcatgtgtgcatgtgtgca--tgt 638
Query: 121 gcatgtgtgcatgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgcatccatgc 180
|| | ||||||||||||||| |||| ||||| ||||||||||| ||||||
Sbjct: 637 gc-------c---tgtgcgtgtgcgtgt--gtgt--gtgtgtgtgtgtgtgcagccatgc 592
Query: 181 ctgacttctgtgggtgctggagatctcaggtcttaattgtttctgtcaactgtacatctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctgacttctgtgggtgctggagatctcaggtcttaattgtttctgtcaactgtacatctt 532
Query: 241 attatactatgcagaatccatatatgtaggaaatgataaacacagctattcttcagaacc 300
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 agaaaactatgcagaatccatatatgtaggaaatgataaacacagctattcttcagaacc 472
Query: 301 aaagaacagagtaacctcatcagcaagaagagcagcaacacaagttgtgtacacagcttt 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaagaacagagtaaccgcatcagcaagaagagcagcaacacaagttgtgtacacagcttt 412
Query: 361 gtgacatgtcccaaaccaagccctgggtcttcctctggtgcagccgcctgcgtgtgccat 420
||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 411 gtgacatgtcccaaaccaagccctgggtcttcctctg----a---------gtgtgccat 365
Query: 421 ctcacctttaatgatggtcagttctgatcattgagaaacggcagtcttagacttagagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctcacctttaatgatggtcagttctgatcattgagaaacggcagtcttagacttagagcc 305
Query: 481 cgtcagccatccacttgtgcctgctcacccgctcagccctgctttcaatcgcttgcactg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cgtcagccatccacttgtgcctgctcacccgctcagccctgctttcaatcgcttgcactg 245
Query: 541 cccctcacgcatctgctgcggccctcatctaccctcggcagcagtgtttgtatgtctcct 600
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 244 cccctcgcgcatctgctgcggccctcatccaccctcggcagcagtgtttgtatgtctcct 185
Query: 601 tgcctcctgatttctatctgctggacccaccttgcacccagccctcanggatgtttctca 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 184 tgcctcctgatttctatctgctggacccaccttgcacccagccctcagggatgtttctca 125
Query: 661 catataaattcagcc 675
|||||||||||||||
Sbjct: 124 catataaattcagcc 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 10
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
