Query= MSMg01no491_a07.b1 MSMg01no491_a07.b1 CHROMAT_FILE:
MSMg01no491_a07.b1 PHD_FILE: MSMg01no491_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:47 2005
(653 letters)
>mm_chr5_18268399_18269452
Length = 1054
Score = 1176 bits (608), Expect = 0.0
Identities = 641/652 (98%), Gaps = 4/652 (0%)
Strand = Plus / Plus
Query: 5 gaattctttctgtttccca-tgttccaccttctatttccttgcttaagccataggtgtta 63
|||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctttctgcctccaaatgttccaccttctatttccttgcttaagccataggtgtta 262
Query: 64 ggctttttaattgacaggtgctgcattcatacaatacacataattttctctctaaaattc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggctttttaattgacaggtgctgcattcatacaatacacataattttctctctaaaattc 322
Query: 124 ctggatttagtccaaataaaa-gttctttttctcaaatataaattgaatacaactataac 182
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccggatttagtccaaataaaaagttctttttctcaaatataaattgaatacaactataac 382
Query: 183 cattatgaaacaattatgaaaactatgaggtatcttgattgctttgacagtaactccctg 242
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 383 cattatgaaacaattatgaaaactatgaggtatcttgattgctgtaacagtaactccctg 442
Query: 243 tcatgctaaagcataaagttgcttat-tgattgtaagaacaaagatttcttaggtaaatt 301
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 tcatgttaaagcataaagttgcttatgtgattgtaagaacaaagatttcttaggtaaatt 502
Query: 302 aacagctcttgaaacaaccaccaagttagaagactattgtctacttgactagcaggtagc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aacagctcttgaaacaaccaccaagttagaagactattgtctacttgactagcaggtagc 562
Query: 362 agaccaacaaggattttagtggagactttaggatatttaaaaaaaatgtaaccatattgc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agaccaacaaggattttagtggagactttaggatatttaaaaaaaatgtaaccatattgc 622
Query: 422 ctgcaggtaagaaatgcgggtaaaaagtttgactttttcttttcttggtcctgtctcgtt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgcaggtaagaaatgcgggtaaaaagtttgactttttcttttcttggtcctgtctcgtt 682
Query: 482 ggtatagctaaaactttatatattatattggataagagtaagaaaaataaatatctttct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggtatagctaaaactttatatattatattggataagagtaagaaaaataaatatctttct 742
Query: 542 ttttgttgtagattttagtggaaatactctcattttccctaataattgcaatcttggtta 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttttgttgtagattttagtggaaatactctcattttccctaataattgcaatcttggtta 802
Query: 602 tgggtttatcaaaaatattctctctttattgtggcatcttattattt-agta 652
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 803 tgggtttatcaaaaatattctctctttattgtggcatcttattatttgagta 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_a07.g1 MSMg01no491_a07.g1 CHROMAT_FILE:
MSMg01no491_a07.g1 PHD_FILE: MSMg01no491_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:47 2005
(578 letters)
>mm_chr5_18355173_18356150
Length = 978
Score = 758 bits (392), Expect = 0.0
Identities = 392/392 (100%)
Strand = Plus / Minus
Query: 1 tctggatgctcagtgactgatgagactcctggctctgactgccgccatacaccttactat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tctggatgctcagtgactgatgagactcctggctctgactgccgccatacaccttactat 333
Query: 61 gacatgtgccaatatacctgatgtgtttagagccaggttctggctttgaatctgcattac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gacatgtgccaatatacctgatgtgtttagagccaggttctggctttgaatctgcattac 273
Query: 121 agattactgggtttgtattctttgggaaactaaacatgaggattaacaacaattctacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agattactgggtttgtattctttgggaaactaaacatgaggattaacaacaattctacct 213
Query: 181 ttttaaaggtactgaaagactcacaacgtgaggactcccccacgttctgactcaggagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ttttaaaggtactgaaagactcacaacgtgaggactcccccacgttctgactcaggagag 153
Query: 241 gcgacaccccaaaatcacccacaagaaacggtcttgctgcaaactgcaagaggattttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gcgacaccccaaaatcacccacaagaaacggtcttgctgcaaactgcaagaggattttta 93
Query: 301 ttcaagagcgctcttgggaccacggtcatataccacgcaggggtagaggagcgtggcgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ttcaagagcgctcttgggaccacggtcatataccacgcaggggtagaggagcgtggcgcc 33
Query: 361 ccaagtagctggataaggggatatttaaagga 392
||||||||||||||||||||||||||||||||
Sbjct: 32 ccaagtagctggataaggggatatttaaagga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
