BAC Information

Click to search

BAC

Clone NameMSMg01-491G02
Chromosome5 (Build37)
Map Location 103,870,474 - 104,029,758
singlet/doubletdoublet
Overlap genePtpn13
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049
Downstream geneSlc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491G02.T7 (MSMg01no491_g02.b1)MSMg01-491G02.TJ (MSMg01no491_g02.g1)
ACCAG569388AG569389
length752757
length of high quality
(start - end)
540 (31 - 570)460 (64 - 523)
definitionCHROMAT_FILE: MSMg01no491_g02.b1 PHD_FILE: MSMg01no491_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:17 2005CHROMAT_FILE: MSMg01no491_g02.g1 PHD_FILE: MSMg01no491_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,029,372 - 104,029,758)(103,870,474 - 103,870,932)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACGACATTAT
CTCCATACAGTGAGTGGCAAGCATTGGTCATATCCTGGCAATCCCCTCCC
ATCCTCACCCTGCACCGGAAACTCCTCCCTATCCCCCAGTAATGAATAGT
CTCAAGACTTTTCCTTGTATTTCCACACGTAGGAGAGAACTTGTCTGTCT
CTGTTTGAAAGGGGCGTCTCCAGGTACATCCACCCTTCTGACAGTGGCAG
ATTTCAGTCTTGATAGCTGAATGATAATCCTCTGTATAAGTACTTAACAA
AATCCATGGATCTGCTGAGGGGCACGAGGGCTAGTTCTGCAGCACAGCCA
TTCTGACTCTCAAGAGCTACAGTAAACACCAGTGTGCAGGCATTTCTTTT
GGTGGTATGCAGAGTGGTATAGCTGGACCACAAGGTAGCCCAAGTGGAGA
TGTCTGAGGAAGTACCCTACTTCATCTCAATGGCTGCACTAATTTCTCTC
CCTACCAACATTGGACATGACTTCCATTTTCTCCACGTTTTGTCCTCTCC
AGCATTTATTTGGGGACATAATCTACTTTCGCCTTCTAAGATCTTCCTTT
ATCATGGGGCCTCCTTTCTATGGCAGAGTTGTCTCAGGGAACAGCTACGT
CACTAGCCAGCTGTCACCTGGCCTGTTCCTCCAGATAGACCTTGTGGCAC
TTTGTTTGTTTTATAAAAATAACGAGAAAGAATGTTTGGTTAAGGGTGGG
TA
GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAC
TGCCGTAAAACACTATGTATATATATTTGACATTTATTGGAGGATAATAG
TGATAGGAATGATTCCAGATGGCTGGTCAATATCCCTCCCTTCCATATCA
CTGAAGTAAACACCGGGTTTTGTATAAAGATCAGGATAGTCCTCACACAC
AAGATCTCTCAAGTGTCCATGTATCAGGGACTTGGATTCTAGGATTTCTC
TATTGTCGGTCTTCCTCAAGGCCAGCCATTCTTCTCATGCCTGTGCATTC
AGTGTCTCTGTGTTTTTTCTGTGAATGTTCTTTTCATTGGCAAGAATTGT
ATAATAAAAAAAAAAAGAAAAAGAAAAAAGAAAAAATCCTTCTTAGAGAA
ACTGTGAGGAAGGAAAATCACGTTGTAATTGACTTTAGCGGCACAAACTT
CCAGACATTCTTCTTCATAGCATTAACATTCCTTAGCTTTAATACTATTC
CTTTCAAATGTGCCTTTTAAACAGAAGAATGGCCGGCTTTAAGACCGTTA
ATGAAAAGACTCACAGAAATAATCTAAGGGGCCAAACTCTTAACTGTGTA
AGATCTGACCCCAATCCATCAGGGGAAATTGGGCTGAGATGCCATTTACT
GTGACTTAGTGTAGAGAAATAAATACAATAATCTTGTGAGAGTTCTGCTT
CCCGCAAAGATGGAATAACCGGAATGAATTTTACCCGACTTCCTGCAAAA
CTGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_g02.b1 MSMg01no491_g02.b1 CHROMAT_FILE:
MSMg01no491_g02.b1 PHD_FILE: MSMg01no491_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:17 2005
         (540 letters)



>mm_chr5_104029372_104030311
          Length = 940

 Score =  741 bits (383), Expect = 0.0
 Identities = 386/387 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacgacattatctccatacagtgagtggcaagcattggtcatatcctggcaatc 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggaattcacgacattatttccatacagtgagtggcaagcattggtcatatcctggcaatc 328

                                                                       
Query: 64  ccctcccatcctcaccctgcaccggaaactcctccctatcccccagtaatgaatagtctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccctcccatcctcaccctgcaccggaaactcctccctatcccccagtaatgaatagtctc 268

                                                                       
Query: 124 aagacttttccttgtatttccacacgtaggagagaacttgtctgtctctgtttgaaaggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aagacttttccttgtatttccacacgtaggagagaacttgtctgtctctgtttgaaaggg 208

                                                                       
Query: 184 gcgtctccaggtacatccacccttctgacagtggcagatttcagtcttgatagctgaatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gcgtctccaggtacatccacccttctgacagtggcagatttcagtcttgatagctgaatg 148

                                                                       
Query: 244 ataatcctctgtataagtacttaacaaaatccatggatctgctgaggggcacgagggcta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ataatcctctgtataagtacttaacaaaatccatggatctgctgaggggcacgagggcta 88

                                                                       
Query: 304 gttctgcagcacagccattctgactctcaagagctacagtaaacaccagtgtgcaggcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  gttctgcagcacagccattctgactctcaagagctacagtaaacaccagtgtgcaggcat 28

                                      
Query: 364 ttcttttggtggtatgcagagtggtat 390
           |||||||||||||||||||||||||||
Sbjct: 27  ttcttttggtggtatgcagagtggtat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no491_g02.g1 MSMg01no491_g02.g1 CHROMAT_FILE:
MSMg01no491_g02.g1 PHD_FILE: MSMg01no491_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:17 2005
         (460 letters)



>mm_chr5_103870274_103871133
          Length = 860

 Score =  797 bits (412), Expect = 0.0
 Identities = 448/460 (97%), Gaps = 1/460 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgtatatatatttgacatttattggaggataatagtgataggaatgattccagatggc 60
           |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tatgtatatatacttgacatttattggaggataatagtgataggaatgattcaagatggc 260

                                                                       
Query: 61  tggtcaatatccctcccttccatatcactgaagtaaacaccgggttttgtataaagatca 120
           |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tggtcactatccctcccttctatatcactgaagtaaacactgggttttgtataaagatca 320

                                                                       
Query: 121 ggatagtcctcacacacaagatctctcaagtgtccatgtatcagggacttggattctagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatagtcctcacacacaagatctctcaagtgtccatgtatcagggacttggattctagg 380

                                                                       
Query: 181 atttctctattgtcggtcttcctcaaggccagccattcttctcatgcctgtgcattcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttctctattgtcggtcttcctcaaggccagccattcttctcatgcctgtgcattcagt 440

                                                                       
Query: 241 gtctctgtgttttttctgtgaatgttcttttcattggcaagaattgtataataaaaaaaa 300
           ||||||||| | | |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 441 gtctctgtgctgtctctgtgaatgttcttttcattggcaagaattgtaaaa-aaaaaaaa 499

                                                                       
Query: 301 aaagaaaaagaaaaaagaaaaaatccttcttagagaaactgtgaggaaggaaaatcacgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaagaaaaagaaaaaagaaaaaatccttcttagagaaactgtgaggaaggaaaatcacgt 559

                                                                       
Query: 361 tgtaattgactttagcggcacaaacttccagacattcttcttcatagcattaacattcct 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtaattgactttggcggcacaaacttccagacattcttcttcatagcattaacattcct 619

                                                   
Query: 421 tagctttaatactattcctttcaaatgtgccttttaaaca 460
           |||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 tagccttaatactattcctttcaaatgtgccttttaaaca 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)