Query= MSMg01no491_h07.b1 MSMg01no491_h07.b1 CHROMAT_FILE:
MSMg01no491_h07.b1 PHD_FILE: MSMg01no491_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:23 2005
(623 letters)
>mm_chr5_42015794_42016816
Length = 1023
Score = 1158 bits (599), Expect = 0.0
Identities = 617/627 (98%), Gaps = 8/627 (1%)
Strand = Plus / Plus
Query: 1 accaagagtggcatgggttagggaaaaaaatgggctggggctgatagaggcctagaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaagagtggcatgggttagggaaaaaaatgggctggggctgatagaggcctagaaatg 260
Query: 61 gcaggctacaggctcaactataaacaagccaacagaatgcctaggaatgcttaagaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggctacaggctcaactataaacaagccaacagaatgcctaggaatgcttaagaaact 320
Query: 121 agcagcacacaagacttcacaggattgctagccatgtgttcaaatatactttgtttttct 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcggcacacaagacttcacaggattgctagccatgtgttcaaatatactttgtttttct 380
Query: 181 gtaacaaaaggaagatgaataaatgaaaatcccagaaaacatattttaaataaatttatt 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gtaacaaaaggaagatgaataaatgaaaatcccaaaaaacatattttaaataaatttatt 440
Query: 241 tatctgagatttt----catctgcacaacaggtccagtgtgatcgatccccaatgatcca 296
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatctgaga----aaaccatctgcacaacaggtccagtgtgatcgatccccaatgatcca 496
Query: 297 aggagatcatgactcatctggaagcactctcatacagtctgtaggagaaattccatgtgg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aggagatcatgactcatctggaagcactctcatacagtctgtaggagaaattccatgtgg 556
Query: 357 aggatcagctgaaccatttatcaaaatccataaagccatctaagccaaatatgataaaat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aggatcagctgaaccatttatcaaaatccataaagccatctaagccaaatatgataaaat 616
Query: 417 atgcaatgaccatgatacagtaataaaaatacaatatcaaatactcactacttgtgagtt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atgcaatgaccatgatacagtaataaaaatacaatatcaaatactcactacttgtgagtt 676
Query: 477 ataaactacaatataaacacattaggctcctttaaaaatgaaaaaatatttctattacag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ataaactacaatataaacacattaggctcctttaaaaatgaaaaaatatttctattacag 736
Query: 537 cctcatttgaagcactttcaattagatacagctttgtatattgtactctcaatagccagc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cctcatttgaagcactttcaattagatacagctttgtatattgtactctcaatagccagc 796
Query: 597 aaaggaacaccttcttgagaggctttc 623
|||||||||||||||||||||||||||
Sbjct: 797 aaaggaacaccttcttgagaggctttc 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_h07.g1 MSMg01no491_h07.g1 CHROMAT_FILE:
MSMg01no491_h07.g1 PHD_FILE: MSMg01no491_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:23 2005
(577 letters)
>mm_chr5_42142110_42143087
Length = 978
Score = 1023 bits (529), Expect = 0.0
Identities = 562/573 (98%), Gaps = 1/573 (0%)
Strand = Plus / Minus
Query: 1 tttaatttctggctctgtcactcatggaacaagtgagacacatagttttccttgaaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tttaatttctggctctgtcactcatggaacaagtgagacacatagttttccttgaaaatg 693
Query: 61 aaaggagttatcatcctgtagagtcggtgcctggcatagaagaagctctctaaaggctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 692 aaaggagttatcatcctgtagagtcggtgcctggcatagaagaagctctctaaagactat 633
Query: 121 ttggactacaagcttagactctaggggattcttgtccccttccccccctttcttctcacc 180
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 taggacttcaagcttagactctaggggattcttgtccccttccccccctttcttctcacc 573
Query: 181 tgctaaaaagagagactctttctctcggaactcactgctcagatggaatagtaaattgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgctaaaaagagagactctttctctcggaactcactgctcagatggaatagtaaattgcc 513
Query: 241 ctttgcattctttgcacagaggctgcagcttgaaaaggatgcattttaagcttgccccac 300
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctttgcatccagggcacagaggctgcagcttgaaaaggatgcattttaagcttgccccac 453
Query: 301 ttgctgcacaccacttcttggcagtggtgtggatactgagaagtagcatcctggtcccta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 452 ttgctgcacaccacttcttggcagtggtgtggatactgagaagtagcatcctggttccta 393
Query: 361 gtgggctggcagctggcacaggaggagggagacagcataagcggacttggtgctctggtt 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 392 gtgggctggcagctggcacaggaggagggagacagcataagtggacttggtgctctggtt 333
Query: 421 ctctctttcctgatggaggtggagtcaggtaggcagaacaggtattctcagtttcatctc 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctctctttcctgatggaggtggggtcaggtaggcagaacaggtattctcagtttcatctc 273
Query: 481 tgagattcaaagattctgttcaccttcctcatgtcct-ggggggcggagcttctcactga 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 272 tgagattcaaagattctgttcaccttcctcatgtcctgggggggcggagcttctcactga 213
Query: 540 cagccaatcaaccacacacacacacacacacac 572
|||||||||||||||||||||||||||||||||
Sbjct: 212 cagccaatcaaccacacacacacacacacacac 180
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space: 548856
Effective search space used: 548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
