Query= MSMg01no491_k18.b1 MSMg01no491_k18.b1 CHROMAT_FILE:
MSMg01no491_k18.b1 PHD_FILE: MSMg01no491_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:39 2005
(510 letters)
>mm_chr5_132955671_132956577
Length = 907
Score = 913 bits (472), Expect = 0.0
Identities = 500/512 (97%), Gaps = 7/512 (1%)
Strand = Plus / Plus
Query: 1 aggtgagcatccattcaagccttcctaatcctcccctttgattccagagttaacaactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgagcatccattcaagccttcctaatcctcccctttgattccagagttaacaactgt 260
Query: 61 ccctgtcacataaatcaaaaccacaaagacaaccaaccctggccagccagcccctgatga 120
|||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||
Sbjct: 261 ccctgtcatataaatcaataccacaaagacacccaaccctggccagcc----cctgatga 316
Query: 121 tctcaggatcctatgtgctctaccaatattaccataaggagtagattcctgacacactat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctcaggatcctatgtgctctaccaatattaccataaggagtagattcctgacacactat 376
Query: 181 taacctcaccatgacaaccattacaggtaactggtacctccttcgtagatggaacgt--a 238
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 377 taacctcaccatgacaaccattacaggtaactggtacctccttggtagatggaacgtgta 436
Query: 239 aacagagggcgaccaatgctgacctgcagacagggctcccgaacctcggtagttttagta 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aacagagggcgaccaatgctgacctgcagacagggctcccgaacctcggtagttttagtg 496
Query: 299 gcgtcctgagcagagagcttcctatctaccacttgccatgttttacttgaaagagcgtcg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcgtcctgagcagagagcttcctatctaccacttgccatgttttacttgaaagagcgtcg 556
Query: 359 ctttgaaaaccacagcagtatcaccacagttaatataaaatattaatgtctcgtttgctc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctttgaaaaccacagcagtatcaccacagttaatataaaatattaatgtctcgtttgctc 616
Query: 419 aacagttttgtagaaattaaaacttttaggttaatcatatactgaacaattttaattaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aacagttttgtagaaattaaaacttttaggttaatcatatactgaacaattttaattaaa 676
Query: 479 acagttataaaacaatttaatccacaagagtt 510
||||||||||||||||| ||||||||||||||
Sbjct: 677 acagttataaaacaatt-aatccacaagagtt 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 907
Length adjustment: 10
Effective length of query: 500
Effective length of database: 897
Effective search space: 448500
Effective search space used: 448500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_k18.g1 MSMg01no491_k18.g1 CHROMAT_FILE:
MSMg01no491_k18.g1 PHD_FILE: MSMg01no491_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:39 2005
(670 letters)
>mm_chr5_133117858_133118927
Length = 1070
Score = 1002 bits (518), Expect = 0.0
Identities = 524/526 (99%)
Strand = Plus / Minus
Query: 145 cttctggcctcaaccagttcctgtacacatatactcacacacagagacactcataaacaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 cttctggcctcaaccagttcctgtacacatatactcacacacagagacactcataaacaa 1011
Query: 205 aagtaaataaaaatacatcatttttaggaagaggaccaggaagccaggttgcagtgacac 264
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1010 aagtaaataaaaatacatcatttttagaaagaggaccaggaagccaggttgcagtgacac 951
Query: 265 acgcctttaatcccaacacttgggaacagaggcaggtggatctctgagtttgaggccagg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 acgcctttaatcccaacacttgggaacagaggcaggtggatctctgagtttgaggccagg 891
Query: 325 ggatgattcaagacccacattgtgatgctcagcactggttatgggaacaacaagcaacca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ggatgattcaagacccacattgtgatgctcagcactggttatgggaacaacaagcaacca 831
Query: 385 aagcacctgccgcacagtggttcccacctagtccaggttcatgtcattaaggagccagaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 aagcacctgccgcacagtggttcccacctagtccaggttcatgtcattaaggagccagaa 771
Query: 445 tttctgatcgctcacagtattttcttcaagtaaggtcattgtggaaaaaccagtccagcg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tttctgatcgctcacagtattttcttcaagtaaggtcattgtggaaaaaccagtccagcg 711
Query: 505 gccatcagggccatcactcctgatactggtttgaccagagaagaacatgaaatattagct 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gccatcagggccatcactcctgatactggtttgaccagagaagaacatgaaatattagct 651
Query: 565 tatgtgtatgttttatttgtgcttaaaagaaaaaccacaaaacaggaggcagtggctaat 624
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 650 tatgtgtatgttttatttgtgcttaaaagaaaaaccacaaagcaggaggcagtggctaat 591
Query: 625 acatatctgtaattctactacaccagaggtgggatattaacagagg 670
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 acatatctgtaattctactacaccagaggtgggatattaacagagg 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
