Query= MSMg01no491_k22.b1 MSMg01no491_k22.b1 CHROMAT_FILE:
MSMg01no491_k22.b1 PHD_FILE: MSMg01no491_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:40 2005
(708 letters)
>mm_chr5_13345674_13346779
Length = 1106
Score = 1280 bits (662), Expect = 0.0
Identities = 694/706 (98%), Gaps = 6/706 (0%)
Strand = Plus / Minus
Query: 5 gaattccatgaaatat--tcccaagtgagcttgaagataataagattcataaatatgtag 62
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gaattccatgaaatatagt--caagtgagcttgaagataataagattcataaatatgtag 849
Query: 63 agactatccatgatgtgtaagccattcattttaggataagaatgcaagctcctctaaagc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 agactatccatgatgtgtaagccattcattttaggataagaatgcaagctcctctaaagc 789
Query: 123 aatccttatggagatagccagtctcccagaagagatccaatggtacctggtcatgttctc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aatccttatggagatagccagtctcccagaagagatccaatggtacctggtcatgttctc 729
Query: 183 gtttctattctcatgttgtgttgttttgtctgtttgttttggtatactaattctcattta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gtttctattctcatgttgtgttgttttgtctgtttgttttggtatactaattctcattta 669
Query: 243 atgaatatagaatgcagaaagaagtaaaaaaattttatatatggtactcatccctttctt 302
|||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 668 atgaatatagaatgcagaaagaagtaaaaaaaaattata-aaggtactcatccctttctt 610
Query: 303 tttggatatatttgttgcaaatccgggataggtatctttataaaaacaaaagaaaatggt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tttggatatatttgttgcaaatccgggataggtatctttataaaaacaaaagaaaatggt 550
Query: 363 ttctacaagatcaatattgtttgtgagttatacaacttaataaatgtatgaaaggaaaac 422
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 549 ttctacaagatcaatattgtttgtgagttatacaacttaataaatgtttgaaaggaaaac 490
Query: 423 atgattaaaagtgatctttgatatttattaaatgggatgatattttatgtcttgcttttc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atgattaaaagtgatctttgatatttattaaatgggatgatattttatgtcttgcttttc 430
Query: 483 atgctttttctgaaattattgacatgtaatagtgaatagtcctgtgatttgtgtggcatt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atgctttttctgaaattattgacatgtaatagtgaatagtcctgtgatttgtgtggcatt 370
Query: 543 ggacacatgagtcacccaaagctttgagatggaagtaaccatctgtgtgttcagagactc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 369 ggacacatgagtcacccaaagctttgagatggaagtaaccatctgtgtgttcacagactc 310
Query: 603 gctttgctaccttttcctgacaacactctcatgcccagggtcagtacatggcttgttcac 662
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gctt-gctaccttttcctgacaacactctcatgcccagggtcagtacatggcttgttcac 251
Query: 663 tccctttatccaacagttcatttatttatcttgactctctgtgagg 708
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttcctttatccaacagttcatttatttatcttgactctctgtgagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1106
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1096
Effective search space: 765008
Effective search space used: 765008
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no491_k22.g1 MSMg01no491_k22.g1 CHROMAT_FILE:
MSMg01no491_k22.g1 PHD_FILE: MSMg01no491_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:40 2005
(523 letters)
>mm_chr5_13157369_13158291
Length = 923
Score = 936 bits (484), Expect = 0.0
Identities = 510/524 (97%), Gaps = 10/524 (1%)
Strand = Plus / Plus
Query: 1 caccctaatgctattttgattagttgaatagagttagattggatattttaaagtgaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccctaatgctattttgattagttgaatagagttagattggatattttaaagtgaattt 260
Query: 61 atcacttcttgaactgtcatggtttatttgggtcccacatgcttacacaagtttaaagaa 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 atcacttcttgaactgtcatggtttattttggtcccacatgcttacacaagtttaaagaa 320
Query: 121 aacatatcaaagtacctttattgttttattatgtcttaggcttccctatgcaagaactat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatatcaaagtacctttattgttttattatgtcttaggcttccctatgcaagaactat 380
Query: 181 caaccatatatgcatatgtgctttcaattttgtatctagagttagttataactgaaggca 240
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 381 caaccatatatgcatatgtgctttcaattctgcatctagagttagttataactgaagg-- 438
Query: 241 atgaagacagctgaaaag-aaaaaaaaacccagatctttccaagtatttgtgcatcaaaa 299
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 -------cagctgaaaagaaaaaaaaaacccagatctttccaagtatttgtgcatcaaaa 491
Query: 300 aatacatattcatactagaacattacttaacaagagtgtgctttgtgcacagagccacag 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aatacatattcatactggaacattacttaacaagagtgtgctttgtgcacagagccacag 551
Query: 360 tgcactgttgataaagttaaagtcgttattccttgtcctctgctgattgccactactggt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgcactgttgataaagttaaagtcgttattccttgtcctctgctgattgccactactggt 611
Query: 420 ggagcccagcaggatagtcagaggaagtccttgaacatttgctctgtttgaatgtttaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggagcccagcaggatagtcagaggaagtccttgaacatttgctctgtttgaatgtttaaa 671
Query: 480 catattgaacgtgagaatgcaatttggagatataaatgtctgag 523
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 catattgaacgtgagaatgcaatttggagatataaatgtctgag 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
