BAC Information

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BAC

Clone NameMSMg01-491K23
Chromosome5 (Build37)
Map Location 31,479,955 - 31,480,267
singlet/doubletsinglet
Overlap geneGtf3c2
Upstream geneHadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17
Downstream geneEif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491K23.T7 (MSMg01no491_k23.b1)MSMg01-491K23.TJ (MSMg01no491_k23.g1)
ACCAG569621AG569622
length743774
length of high quality
(start - end)
313 (325 - 637)506 (67 - 572)
definitionCHROMAT_FILE: MSMg01no491_k23.b1 PHD_FILE: MSMg01no491_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:40 2005CHROMAT_FILE: MSMg01no491_k23.g1 PHD_FILE: MSMg01no491_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCGNGACTCGGCGGAATTCCAGA
ACCNTTACTTAAAAATGGTAAGGGCTGAGATGACAAGCTTTCACCATCCT
GGCCAACTGATATCTCTAAATCTGAAGTGAGAATCTGTTTCGTAGCTATG
GTTACTATAGTTACTTAATCGCAATTTAATGTTCCACTGTTGTGAATGAT
GCCAGTGTTTGATATTAGAGTTTCTCTATTAGCAAGTCTTCTTCCCTTCT
CTCCCTCCCTCCCTGCCTCTCTTTGTTCCTTCCTGTACTGGAGATTGACT
CCAAGATTTTGGTATTCGTCAATTAAATGCTCTACTCCTGAACTATTCTT
TAGCTCATATAAAAGAAAAAATTACATGGATCTTACACTTGCATATCCAG
GATGTCATGCCCACCAATGATGTCTTATCTTAGTGAAGGGTTTCTCAAGG
TTGTAATTCTTTTCTGATTTCAAGTATTTGTGAGAACTTTGAAGCAGCTC
TGGTGCCTTTTCCTCTGTAGGCGACTCATACCAAAAGTGCTGAGATGAGC
AGAGATGTTTCCTTTTGAAATGTAGTGTTTTCACTCAGATATTTTTTGCT
ATAGTAATTGTTTGTTGATTTTATTTCTTTTTTGTACAGTAAGCCTTTGC
TTTATTCCTGACCGTGGGTGTTTTGCTTGTGTGTATTGTATGCATGTGCA
CCTCTTATGTGCCTGGTGCTCTCAGAAGAACTTAGATTCTTTG
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGAGATCTACCTGCCTCTTCCTCCCAAGTGCTGG
GATTAAAGGCGTGCAAAATTGATGTCTGGCACCATACCTGGTTTTATGTG
GTGCTGGGAATCAAACCAGGCAAGCACTCTGTCATCTGAGCTACACCCCC
AGCCCCAAGTCCTATCATTTTAAGGCTTAGATTGCCCCAGATTTTGCCAG
TTGACTTTTATGTCCCTTAGAGATGACCTTATCAGTCACTGAGAAAGACT
TGGCTTTCTTGAAAAAGAAAACGTACATTGCAGCTAGTACTTTGCCTCCA
GCCCTAAAATAATCCATTTCTCCAAGCAACTGTTTTGGTGTTTTTTTAAT
TTTTATTTTTGAGACAGGGTCTCTCTGTGTAACCCTGGCCGTCCTGGAAC
TAGCTGTGTAGACCAGGTTGAATTTAGAGACCCACCCACTTCTGTCTCCT
GAGTGCTGGAATTAAAAGTGTGAACCAACATGTCCGGCTTCGGGTTTTTT
GTTGGTTTGTTTGTTTTTCAGTCATCAGTGGTGTCGAGAAACCAGAGACC
TAGAACATAACATGCTTATTGTTACTGGAGTGCCACTGTTCCGAGGCGCT
GCCAAGAGCTACCTTTACCCCTTATTCGTTTCTATATGGATATATGGATA
TATTTCTGGTCATTTCTATATGNATATAGNACATGCCAACAGCCCAACAG
CATATCCTGGTTCAATTCACTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_k23.b1 MSMg01no491_k23.b1 CHROMAT_FILE:
MSMg01no491_k23.b1 PHD_FILE: MSMg01no491_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:40 2005
         (313 letters)



>mm_chr5_31479755_31480467
          Length = 713

 Score =  543 bits (281), Expect = e-159
 Identities = 305/313 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgctctactcctgaactattctttagctcatataaaagaaaaaattacatggatctt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 513 aaatgctctactcctgaactattctttagctcatagaaaagaaaaaattacatggatctt 454

                                                                       
Query: 61  acacttgcatatccaggatgtcatgcccaccaatgatgtcttatcttagtgaagggtttc 120
           ||||||||||||||||||||||||||  |  |||||||||||| ||||||||||||||||
Sbjct: 453 acacttgcatatccaggatgtcatgctgatgaatgatgtcttagcttagtgaagggtttc 394

                                                                       
Query: 121 tcaaggttgtaattcttttctgatttcaagtatttgtgagaactttgaagcagctctggt 180
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tcaaggctgtaattctcttctgatttcaagtatttgtgagaactttgaagcagctctggt 334

                                                                       
Query: 181 gccttttcctctgtaggcgactcataccaaaagtgctgagatgagcagagatgtttcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gccttttcctctgtaggcgactcataccaaaagtgctgagatgagcagagatgtttcctt 274

                                                                       
Query: 241 ttgaaatgtagtgttttcactcagatattttttgctatagtaattgtttgttgattttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttgaaatgtagtgttttcactcagatattttttgctatagtaattgtttgttgattttat 214

                        
Query: 301 ttcttttttgtac 313
           |||||||||||||
Sbjct: 213 ttcttttttgtac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)