BAC Information

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BAC

Clone NameMSMg01-491L17
Chromosome5 (Build37)
Map Location 85,350,447 - 85,351,143
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491L17.T7 (MSMg01no491_l17.b1)MSMg01-491L17.TJ (MSMg01no491_l17.g1)
ACCAG569657AG569658
length7361,322
length of high quality
(start - end)		700 (37 - 736)---
definitionCHROMAT_FILE: MSMg01no491_l17.b1 PHD_FILE: MSMg01no491_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:44 2005CHROMAT_FILE: MSMg01no491_l17.g1 PHD_FILE: MSMg01no491_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAG
TTATTAGTTTTCAGTCTCCTATATATTTACATACAACAACAATATGTAGT
TTACTCAGGATATTCCTTAAAATAAGGTCTTTGGTCATGGATATTTAAGA
AATTACATACTATGATATCAGCCACTTTTTATTGTTTAAAACAATTGTAA
AATTTAAATATATTTTATCATAGTCTTCCCCTGCCAAAAGTGCTTCCAGA
TACTCTCTCCTTTATAACCTATAACTTGCTATCTTCAGCAGTCTTCTCTC
TAGAGGACTAGGGACTATGCCTCAAAATAGATATATTTAAAGTCAGTGCC
ACCTGTTGGGGTATATATACTCTGAATTGTATCTATGTAACTTTAGATCT
ATTAGTAATTTCAAACAGTGTGAACTCCAATTTCATAGCAGAACATTCTT
GGCATAGTGAAAAATCTTAAAGACAAATAAGTTACAGTATAAAAAGGTAA
TAAAATACATCACAATAACATAAAATGTATTAGCTTTCAAGACACATACC
CATTTAGAGACCGATATACAAGTGAAGGTGTGAGTATCTGTGAGTAAATG
AGATTTCTCTCTATGGACAGAAACTATTTTAGGTGATTTGATTCTTCTAA
AATAAAGCACAGATTCCCACTGGCCTCTTGACCAATATGTAGGAGAATAA
ACAAAACTGATTTCCTCAATTTCAAGGGAGTGCACT

TGTCTGATGTGAGTCTGTGGTGAGGGACAGACTTTCTCCATCACCTTCCN
TGGGAGGTGCTTCTTCCCGCGTATTCTCCCTCATATGCCCTGCGTAGGGT
CGGCGCGCCGTGCGGCTCACAAAGCAGCAGAGGAGAAATACATTATGCTA
GACAAGTGAGATGATTGAGCTGTTGTGAGCAGCACGCTAGTGCGCAGAAG
GATTGGAGGCTAGGTCACAGNCGCGAGGTACTCTCGTCAGCGTCTGTCCG
CTCTTCTTTTCTACGTGCATTGCTTNTCCCTACTCTTACCACTATCTACT
ACCGACACACGACTAGCTCATAACTTCCGACAACATTCCGAAGTAGCACN
CACTCAACACAAAGTACAAACATATAACATATAGAAACTCGGTAGGCGCT
ATGAATGTTGCATTGCTACTCTCTTCCTGCTCGTATTCAAGAGTTGCACG
ACTATCTCTCATTCCGCCGTCTCTGCATTTGTACTCTCCGTTATCACGTT
ATCTCCCTCGCGTACATAACTAAACTTCTAACCTCATACTAACAACTATC
CGCTACGGGCAGCGGTCGGGCAGTGTCATATAGAGATGAGCGTTGTGTGG
CGGCATGTATGCACCGCGACACTGGCATGTCATGAATGGAATAGTAAGAT
GTGCTAGTGATAGACAGAATCATATACTAGATGCATCGTACACGTGCCAG
TCGTAACCACATACTCACTGCTAAATCTGCGTTCTCTATGCTACACACAG
TAACCTAATTATGCTCACCTCGCAGAGTAGACGACATAGACGTCATCGAT
GCCATATCCGAGATAGCCGAGAGTCCGGTGCCGCACATATGCATCGCGNC
NACCACTCGAGTGCGACATGTATTTCCATCCTGTCTATCATCATCGCACG
TTCATGATATGACTGTGTATGACGTCATGCACGCTGACGCGTACGCTACA
CTCCAATATCAATACATAGACACACTCTAACGATAGGCATACTATGNACG
GACTACTGCTGGTNGTGCGCTAGTAGACGATCGAGCTCTCTTATAAAGAT
GTATGCTAAGATTCNGTATGCATACTGTATTGTTACGTAGAACTAGACTA
TGATAGCACGAAGANCTGCAGAAACTGAGTCTATAACAATATCTGCTATA
TAGCACCTTCCTATATCGTGCTGTCANTATTCAGACACATATGGAACTCT
CTATCACGTGGACAGAAGTCGAAGACCATATACAGTGTACCGCGTAGTGC
GCATGTAGAGAGTGTAGAACTNGTAAGAATATAGTACTCGCCGTTGTCAG
TCGCACTACGNTATCACGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_l17.b1 MSMg01no491_l17.b1 CHROMAT_FILE:
MSMg01no491_l17.b1 PHD_FILE: MSMg01no491_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:44 2005
         (700 letters)



>mm_chr5_85350244_85351343
          Length = 1100

 Score = 1332 bits (689), Expect = 0.0
 Identities = 695/697 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaagttattagttttcagtctcctatatatttacatacaacaacaatatgtag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaagttattagttttcagtctcctatatatttacatacaacaacaatatgtag 263

                                                                       
Query: 64  tttactcaggatattccttaaaataaggtctttggtcatggatatttaagaaattacata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttactcaggatattccttaaaataaggtctttggtcatggatatttaagaaattacata 323

                                                                       
Query: 124 ctatgatatcagccactttttattgtttaaaacaattgtaaaatttaaatatattttatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctatgatatcagccactttttattgtttaaaacaattgtaaaatttaaatatattttatc 383

                                                                       
Query: 184 atagtcttcccctgccaaaagtgcttccagatactctctcctttataacctataacttgc 243
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 atagtcttcccctgccaaaagtccttccagatactctctcctttataacctataacttgc 443

                                                                       
Query: 244 tatcttcagcagtcttctctctagaggactagggactatgcctcaaaatagatatattta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatcttcagcagtcttctctctagaggactagggactatgcctcaaaatagatatattta 503

                                                                       
Query: 304 aagtcagtgccacctgttggggtatatatactctgaattgtatctatgtaactttagatc 363
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 aagtcagtgccacctgttggggtatatatactctgaattgtatctttgtaactttagatc 563

                                                                       
Query: 364 tattagtaatttcaaacagtgtgaactccaatttcatagcagaacattcttggcatagtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tattagtaatttcaaacagtgtgaactccaatttcatagcagaacattcttggcatagtg 623

                                                                       
Query: 424 aaaaatcttaaagacaaataagttacagtataaaaaggtaataaaatacatcacaataac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaaatcttaaagacaaataagttacagtataaaaaggtaataaaatacatcacaataac 683

                                                                       
Query: 484 ataaaatgtattagctttcaagacacatacccatttagagaccgatatacaagtgaaggt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ataaaatgtattagctttcaagacacatacccatttagagaccgatatacaagtgaaggt 743

                                                                       
Query: 544 gtgagtatctgtgagtaaatgagatttctctctatggacagaaactattttaggtgattt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtgagtatctgtgagtaaatgagatttctctctatggacagaaactattttaggtgattt 803

                                                                       
Query: 604 gattcttctaaaataaagcacagattcccactggcctcttgaccaatatgtaggagaata 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gattcttctaaaataaagcacagattcccactggcctcttgaccaatatgtaggagaata 863

                                                
Query: 664 aacaaaactgatttcctcaatttcaagggagtgcact 700
           |||||||||||||||||||||||||||||||||||||
Sbjct: 864 aacaaaactgatttcctcaatttcaagggagtgcact 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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