CCGCTAAACGACTCACTATTTTTCAGAAATGCGCGGAATTCTGTAACATT
TCCTGTGATAGCCTCCAGGACCTGGAGACAGGTTGGTGTGAGATTTTTTT
CCATTTGCTCTTAGAGCCTAACAGGTAGGGAGCAGTAATGTTTGTTGAGT
GAATAATCGATTGTAAATCCTTTCTTGACCCCTTAGGCTAGTAGATGGTG
AGAATGAGATAAAGCATGTGGTTCCTGACTGACGACAAAGAGGGACACAG
AAATAGTGAGGACATGTCCAGCATCTCTGCCAGCTAGCACCAGGCCAAGT
GAGTGATCTTTTTTAGGCCTCAGGGCCATTTTTGTCTGGGCTTGTGGCCT
CTGGTGGCAACAGATCATAGGAGGGCCGGAGGGCCGGTGAGGTGGCAAGA
GGCTTTGGTGACAATGATGAATGATAATGGCAGGCATCAAGGGTGGTTGT
CACCAGGGGTGGCCCAGAGTCGGGGCATGGTGGCTCATGTGGAACTGAGG
CCAAAGGATCATTGGTTCAATGTCATCTTTGGCTACATAGTGAGTTCAAG
GCCAGCCTGGGCTATATGACTTTCTCCCCTCCCCCCCCCTTCGCTCTCTC
TCTTTGGGTCTTCGAGACAGGGTTTCTCTGTGTAGTCATGGCTGTCCTGG
AACTCCCTCTGTAAACCAGGCTGGTCTCAAACTCTGAGACCCATCAGCCT
CTTGCCTCCCAGTGCTGAGATTAAAGGCATGCGCCACTACCACCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCTAGAATCATTCTGGCCCATCACTGAGTGTGTCCCTGGC
TCAGGGGATAGCCCTCCCTAGGCGCCTTTGTCTGGCTGTTTTGTCTTTCT
CTTTCCCATCAAGCTATGACCAAGTTAGAGGACAGTGGCTCTAGGCTTGA
CACATACATGCAGGTGGAGACGTGGGGAGCAGTCAAGTGACAAGTTAGGG
ACATAAGACTTGGGTTTCACAAATACTGTCAGTGACCAGGGCCAGCTGCT
GATGTCTCTGGGCCTCAGTTTATAACCCAATGCAACGAGGGCAGCATTAG
CACCCCCCAGGCTTGCCCATGCCCCCCTCCTCTGCACTCTCGTACCTGGG
TGATGGAACCCTCCTTCAGAGGCCGTGGTGCCAGGGGTAGCTCAGGTGTG
CGGCGCAGCTCCTCTCTCGGGATCTCATGGATAGAGCGGCCCGCCTCCTT
CACAGTTGCTACCACACCCTCGTGAGTCGGCTTCAGCTTCAGGGGACCCA
GAGGGTCCAGGGGCCGGGGCTTGTATGTCTCAGTCAGGTCCCGAGGTGGT
GGTGGGGGGTGGTGGTAGCCCTTCTCTCTTCAAAATGCTGGCCTCTTCTC
AGATGTTTTCATTCTGTCGCCTTTTATAAGTACCACTCTATGCCTTGCGT
GNTACATACTTTTGTATTGTTCACTGCCTTGTCTTGAGTAGGTTTAATTA
TATT

Query= MSMg01no491_o04.b1 MSMg01no491_o04.b1 CHROMAT_FILE:
MSMg01no491_o04.b1 PHD_FILE: MSMg01no491_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:56 2005
         (249 letters)



>mm_chr5_125693429_125694077
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctccaggacctggagacaggttggtgtgagatttttttccatttgctcttagagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agcctccaggacctggagacaggttggtgtgagatttttttccatttgctcttagagcct 390

                                                                       
Query: 61  aacaggtagggagcagtaatgtttgttgagtgaataatcgattgtaaatcctttcttgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aacaggtagggagcagtaatgtttgttgagtgaataatcgattgtaaatcctttcttgac 330

                                                                       
Query: 121 cccttaggctagtagatggtgagaatgagataaagcatgtggttcctgactgacgacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cccttaggctagtagatggtgagaatgagataaagcatgtggttcctgactgacgacaaa 270

                                                                       
Query: 181 gagggacacagaaatagtgaggacatgtccagcatctctgccagctagcaccaggccaag 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 269 gagggacacagaaatagtgaggacatgtccagcacctctgccagctagcaccaggccaag 210

                    
Query: 241 tgagtgatc 249
           |||||||||
Sbjct: 209 tgagtgatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no491_o04.g1 MSMg01no491_o04.g1 CHROMAT_FILE:
MSMg01no491_o04.g1 PHD_FILE: MSMg01no491_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:56 2005
         (514 letters)



>mm_chr5_125513161_125514074
          Length = 914

 Score =  994 bits (514), Expect = 0.0
 Identities = 514/514 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagaatcattctggcccatcactgagtgtgtccctggctcaggggatagccctcccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagaatcattctggcccatcactgagtgtgtccctggctcaggggatagccctcccta 260

                                                                       
Query: 61  ggcgcctttgtctggctgttttgtctttctctttcccatcaagctatgaccaagttagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcgcctttgtctggctgttttgtctttctctttcccatcaagctatgaccaagttagag 320

                                                                       
Query: 121 gacagtggctctaggcttgacacatacatgcaggtggagacgtggggagcagtcaagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagtggctctaggcttgacacatacatgcaggtggagacgtggggagcagtcaagtga 380

                                                                       
Query: 181 caagttagggacataagacttgggtttcacaaatactgtcagtgaccagggccagctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagttagggacataagacttgggtttcacaaatactgtcagtgaccagggccagctgct 440

                                                                       
Query: 241 gatgtctctgggcctcagtttataacccaatgcaacgagggcagcattagcaccccccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgtctctgggcctcagtttataacccaatgcaacgagggcagcattagcaccccccag 500

                                                                       
Query: 301 gcttgcccatgcccccctcctctgcactctcgtacctgggtgatggaaccctccttcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttgcccatgcccccctcctctgcactctcgtacctgggtgatggaaccctccttcaga 560

                                                                       
Query: 361 ggccgtggtgccaggggtagctcaggtgtgcggcgcagctcctctctcgggatctcatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggccgtggtgccaggggtagctcaggtgtgcggcgcagctcctctctcgggatctcatgg 620

                                                                       
Query: 421 atagagcggcccgcctccttcacagttgctaccacaccctcgtgagtcggcttcagcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagagcggcccgcctccttcacagttgctaccacaccctcgtgagtcggcttcagcttc 680

                                             
Query: 481 aggggacccagagggtccaggggccggggcttgt 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 aggggacccagagggtccaggggccggggcttgt 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)