BAC Information

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BAC

Clone NameMSMg01-493D20
Chromosome5 (Build37)
Map Location 92,142,793 - 92,353,849
singlet/doubletdoublet
Overlap geneEG665860, LOC665864, LOC100040506, Ppia-ps5_892.1
Upstream geneCxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik
Downstream geneRchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493D20.T7 (MSMg01no493_d20.b1)MSMg01-493D20.TJ (MSMg01no493_d20.g1)
ACCAG570806AG570807
length759754
length of high quality
(start - end)		440 (44 - 483)670 (73 - 742)
definitionCHROMAT_FILE: MSMg01no493_d20.b1 PHD_FILE: MSMg01no493_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:41 2005CHROMAT_FILE: MSMg01no493_d20.g1 PHD_FILE: MSMg01no493_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:42 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(92,353,588 - 92,353,849)(92,142,793 - 92,143,462)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTGTATTCAAAGTGTCCCCAAGATACCTCTAGCTCCTGTGATATA
AAGTGTTTACAATCTCAGTTGCTAAGCTGACAGGGCACAATGTACTGTCT
GAACTGAAGGGCAAATTCATTCATTTGAGGCCTGATGATTGACATATCTC
TGCTTTCCTGATTCCCTGCTTACATGGCCTGCTGTTTCTTATTCCATTGC
AAAACTAAAAGCATACGGTCAACCATTCACCAGCCCCTGACAGCAAATAT
TATTCTAAAATCAAACTATGGAATATTTTCTATTCAAATGGAGAACTACT
AAAGGATGTATCATCACTTTAATTCCTATTTATTGGAAATTCCAGGTGCT
ACAGAGACCATAAAAACAATAAATAGGAGGCTGGAGAGGTAGTTTACTTG
CTAAGAGTGCTTCCTGCTCCACTCGAAAGCCTGAGTTAAATTCTCAGCAG
TCATGACCGGAGGCTCACAGCCACCCCATAATTCTAGCTGCAAGAGATTC
TGACACCTCTTGCCTTCTGTGGGCACTGGCACTCAAGCACAACAGACAAT
GTGCATGGGGATTTAAGTAATTTAAACCTTAAAAAAACCCGAAATTTTCC
TTCAAGGGGGGGAAAAGCCCGACCTTTTTTACCCTTAAAGGGGGGGGGAT
TGGATTTTTAATTTTAGAAAAATTTGGACATTTTTGTCCCCTATAAACCC
CCAAAATAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGCTTTCCTCACTTGTATTAATTGCTC
GTTTTTGTCTTGGGGCATAGCAGAGAGTAAACAATTTACTTTTGTCACCT
CTGACTGCATATGCATATGAAATTCATATTTCTAAATCTAAATGTAAGTA
TCCCAGTTTTTGTTGGTGAATGCAGCTGTAACATCAGCTTGCAAAAGACA
GGTGGGCGTGAATGATGCACACACGCAAAAGGCGCACTTACACAAATGTC
ATTGTCTGTGTTAGCATGGCAATGTCTGGATCCATTCCCTGTGCTTGGTT
TAGTCAGCAGGCATTTACTGAACTCTTATTACATTCTAGATGCTACTGTG
CTGGAAACTTGGAAAGAGTTCATAAACACACACACATAAGAAAAAAGAAA
TGCTCCAAGCTTTACCCCCATAAGATGACTCCCTTCCTGCAAGAGAGACA
GATCCTAAAAGGAGACATGAGAGAGAGAAAGAAGCAGTAGGGCAGAAGAG
AGACAGCAACTTGGGACAAAGCAGGGGGAAGGAAAGAGAAATTCCCAACT
CATATGAGAACTGTTCTGTGCACAATTCCCAAACCAATAAAGATACTGCA
AATGGTAGAAGGGCCACATGACATTGTCTTGCATCCAAGACTAGCTGAGA
CTCAAGACTGCAAACTAGACAGTCACCATCTACATAGTCTGAGGAAGACT
AGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_d20.b1 MSMg01no493_d20.b1 CHROMAT_FILE:
MSMg01no493_d20.b1 PHD_FILE: MSMg01no493_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:41 2005
         (440 letters)



>mm_chr5_92353210_92354049
          Length = 840

 Score =  460 bits (238), Expect = e-134
 Identities = 256/262 (97%)
 Strand = Plus / Minus

                                                                       
Query: 179 acatggcctgctgtttcttattccattgcaaaactaaaagcatacggtcaaccattcacc 238
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 640 acatggcctgctgtttcttattccattgcaaaactaaaagcatacggccaaccattcacc 581

                                                                       
Query: 239 agcccctgacagcaaatattattctaaaatcaaactatggaatattttctattcaaatgg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agcccctgacagcaaatattattctaaaatcaaactatggaatattttctattcaaatgg 521

                                                                       
Query: 299 agaactactaaaggatgtatcatcactttaattcctatttattggaaattccaggtgcta 358
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 agaactactaaaagatgtatcatcactttaattcctatttattggaaattccaggtgcta 461

                                                                       
Query: 359 cagagaccataaaaacaataaataggaggctggagaggtagtttacttgctaagagtgct 418
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 460 cagagaccataaaaacaataaataggagactggagaagtagtttacttgctaagagtgct 401

                                 
Query: 419 tcctgctccactcgaaagcctg 440
           |||||||||||| |||| ||||
Sbjct: 400 tcctgctccacttgaaaacctg 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_d20.g1 MSMg01no493_d20.g1 CHROMAT_FILE:
MSMg01no493_d20.g1 PHD_FILE: MSMg01no493_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:42 2005
         (670 letters)



>mm_chr5_92142593_92143662
          Length = 1070

 Score = 1218 bits (630), Expect = 0.0
 Identities = 660/670 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctttcctcacttgtattaattgctcgtttttgtcttggggcatagcagagagtaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctttcctcacttgtattaattgctcgtttttgtcttggggcatagcagagagtaaac 260

                                                                       
Query: 61  aatttacttttgtcacctctgactgcatatgcatatgaaattcatatttctaaatctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttacttttgtcacctctgactgcatatgcatatgaaattcatatttctaaatctaaa 320

                                                                       
Query: 121 tgtaagtatcccagtttttgttggtgaatgcagctgtaacatcagcttgcaaaagacagg 180
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tgtaagcatcccagtttttgttggtgaatgcagctgtaacatcagcttgcaaaagacaag 380

                                                                       
Query: 181 tgggcgtgaatgatgcacacacgcaaaaggcgcacttacacaaatgtcattgtctgtgtt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 381 tgggcgtgaatgatgcacacacgcaaaaggtgcacttacacaaatgtcagtgtctgtgtt 440

                                                                       
Query: 241 agcatggcaatgtctggatccattccctgtgcttggtttagtcagcaggcatttactgaa 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatggcaatgcctggatccattccctgtgcttggtttagtcagcaggcatttactgaa 500

                                                                       
Query: 301 ctcttattacattctagatgctactgtgctggaaacttggaaagagttcataaacacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcttattacattctagatgctactgtgctggaaacttggaaagagttcataaacacaca 560

                                                                       
Query: 361 cacataagaaaaaagaaatgctccaagctttacccccataagatgactcccttcctgcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacataagaaaaaagaaatgctccaagctttacccccataagatgactcccttcctgcaa 620

                                                                       
Query: 421 gagagacagatcctaaaaggagacatgagagagagaaagaagcagtagggcagaagagag 480
           ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 621 gagagacagatcctaaaaggagacatgagagagaggaagaagcagcagggcagaagagag 680

                                                                       
Query: 481 acagcaacttgggacaaagcagggggaaggaaagagaaattcccaactcatatgagaact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagcaacttgggacaaagcagggggaaggaaagagaaattcccaactcatatgagaact 740

                                                                       
Query: 541 gttctgtgcacaattcccaaaccaataaagatactgcaaatggtagaagggccacatgac 600
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcctgtgcacaattcccaaaccaataaagatactgcaaatggtagaagggccacatgac 800

                                                                       
Query: 601 attgtcttgcatccaagactagctgagactcaagactgcaaactagacagtcaccatcta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 801 attgtcttgcatccaagactagctgagactcaagactgcaaactagacagtcaccattta 860

                     
Query: 661 catagtctga 670
           ||||||||||
Sbjct: 861 catagtctga 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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