ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCAGGATCCGCGGA
ATTCTTTGTGTTATGTGTCATTGTTCTTTATTCTGTGTGTGCAAAATTAA
GAGCACGTCTGAACCTTCCTTATTTTCTCTCTTCAAGTCCTTTTGCGGTC
TCTTGAAACATTCCCCCACCACACACAAGACTTCTTACAAATTAGCCGTC
AGAATTCTTCAACCTTTGCCCAAGAGCTTGGACCTTGCATGCTGACAGAC
TTGTACCTGAACTTTGCTGTCACTTTGGATAAGTTGCTCAGTTAAGATTA
GCTCCTCGTCAAAGATCACAAAGCAATGACCTAAATAAAGTGACAGTGGT
TTCCCTTTCACATGAAAGTAGAGAGTTGGTGGTGGTTTGAAAGAAAACAC
ACACACACACTCACACACATACACACTCACACACACACACACACACACAC
ACACACACACACCATAGGAGTGGACGCATCAGGAGTCAGGGCGTATGGCC
TTGTTAAAGTGGGTGGGGCTTTGCTGGAGAAAGTATGTCACTAGGGGATA
GACTTGAGGTCTCAAATGCTCAAGCCAGGTCTAGTGTTGCATTCACTTCC
TGCTGCCTGTCTAACCTGATGTAGAACTCTGTTACCTCCCCAGCTCCATG
GCTGCCTGGATGCTGCCATGCTTCCTGCCAAGAAGATAATGGACTNAACC
TCTGAAACTGTATCAAATGTTTGCCTTTATAAGAGTTC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCGCCTGAGGAATACCGAATGGCTGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAGAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGGCTGGCGGTTCCTCAAAAAATTGGACATAGTACTACCGGAGGATCCCG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAGAAG
GACACATGCTCCACTATGTTCACAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATAGATACAGAAAATGT
GGTACATTTACACAATGGAGTAGTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAATGA
GGTAACCCAATCACAAAAGAACTCATACAATATGTACTCACTGATAAGTG
GATATTAGCCCAGAAATTTAAAATACCCAAGATATAAGATACAATTTGCT
AAACGCATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTT

Query= MSMg01no493_k03.b1 MSMg01no493_k03.b1 CHROMAT_FILE:
MSMg01no493_k03.b1 PHD_FILE: MSMg01no493_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:15 2005
         (645 letters)



>mm_chr5_105847683_105848727
          Length = 1045

 Score =  835 bits (432), Expect = 0.0
 Identities = 455/470 (96%), Gaps = 12/470 (2%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaattctttgtgttatgtgtcattgttctttattctgtgtgtgcaaaattaagagcacgt 74
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattctttgtgttaggcgtcattgttctttattctgtgtgtgcaaaattaagagcacgt 274

                                                                       
Query: 75  ctgaaccttccttattttctctcttcaagtccttttgcggtctcttgaaacattccccca 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctgaaccttccttattttctctcttcaagtccttttgcggtctcttgaaacattccccca 334

                                                                       
Query: 135 ccacacacaagacttcttacaaattagccgtcagaattcttcaacctttgcccaagagct 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ccacacacaagacttcttacaaattagccgtcagaattcttcaacctttgcccaagagct 394

                                                                       
Query: 195 tggaccttgcatgctgacagacttgtacctgaactttgctgtcactttggataagttgct 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tggaccttgcatgctgacagacttgtacctgaactttgctgtcactttggataagttgct 454

                                                                       
Query: 255 cagttaagattagctcctcgtcaaagatcacaaagcaatgacctaaataaagtgacagtg 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cagttaagattagctcctcgtcaaagatcacaaagcaatgacctaaataaagtgacagtg 514

                                                                       
Query: 315 gtttccctttcacatgaaagtagagagttggtggtggtttgaaagaaaacacacacacac 374
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 515 gtttccctttcacatgaaagtagagagtttgtggtggtttgaaagaaaacacacacacac 574

                                                                       
Query: 375 actcacacacatacacactcacacacacacacacacacacacacacacacacaccatagg 434
           ||||||||||||||||||||||||||||||||||||||||||            ||||||
Sbjct: 575 actcacacacatacacactcacacacacacacacacacacac------------catagg 622

                                                             
Query: 435 agtggacgcatcaggagtcagggcgtatggccttgttaaagtgggtgggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agtggacgcatcaggagtcagggcgtatggccttgttaaagtgggtgggg 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)