Query= MSMg01no494_o24.b1 MSMg01no494_o24.b1 CHROMAT_FILE:
MSMg01no494_o24.b1 PHD_FILE: MSMg01no494_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:54 2005
(582 letters)
>mm_chr5_104721912_104722893
Length = 982
Score = 1062 bits (549), Expect = 0.0
Identities = 558/561 (99%)
Strand = Plus / Plus
Query: 22 cccccccccccgactgcccccagcacagaaatctaaatggcagggagagccagggtggtc 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 cccccccccccgactgcccccagcacagaaatctaaatggcagggagagccagggtggtc 281
Query: 82 gagaggagaaccttagcaatccgtaggcagaagggatagagggaacctgagcacaatgcc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gagaggagaaccttagcaatccgtaggcagaagggatagagggaacctgagcacaatgcc 341
Query: 142 acggggttgggaagaggagaaatggtggcctcgggttaccatagaaaccacataagaact 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acggggttgggaagaggagaaatggtggcctcgggttaccatagaaaccacataagaact 401
Query: 202 cgatagaaaagtgttcattccactgttcatgcaaaacacagtggttaaaaagtcagtggc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cgatagaaaagtgttcattccactgttcatgcaaaacacagtggttaaaaagtcagtggc 461
Query: 262 ctccgcgaagccagttcccggagctacgaggcaaaggctgccttggggcaagttgaaggg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctccgcgaagccagttcccggagctacgaggcaaaggctgccttggggcaagttgaaggg 521
Query: 322 tgagcagacaggaaagaaattgaatcagcagctacattagtcatttttctgttgttgtga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgagcagacaggaaagaaattgaatcagcagctacattagtcatttttctgttgttgtga 581
Query: 382 taaaacaccatgcccagaggcaagttatggaagagtttattttgatatctgcttccagag 441
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 582 taaaacaccatgcccagaggcaagttatggaagaatttattttgatatctgcttccagag 641
Query: 442 gggtaagtggccatcttatggagacaggaagtagcatggtagccagagtgggaagctgag 501
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 642 ggctaagtggccatcttatggagacaggaagtagcatggtagccagagtgggaagccgag 701
Query: 502 acctcccttcctcaagagcaagtaaaacgcagagagagcaaactagaaatagagcaacag 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 acctcccttcctcaagagcaagtaaaacgcagagagagcaaactagaaatagagcaacag 761
Query: 562 tctataatattaaaccctgcc 582
|||||||||||||||||||||
Sbjct: 762 tctataatattaaaccctgcc 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_o24.g1 MSMg01no494_o24.g1 CHROMAT_FILE:
MSMg01no494_o24.g1 PHD_FILE: MSMg01no494_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:54 2005
(531 letters)
>mm_chr5_104901713_104902649
Length = 937
Score = 946 bits (489), Expect = 0.0
Identities = 524/537 (97%), Gaps = 6/537 (1%)
Strand = Plus / Minus
Query: 1 tgatgaccacgggtgtaatacgctgtacataatataatttgcttgaaacatgaagcttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgatgaccacgggtgtaatacgctgtacataatataatttgcttgaaacatgaagcttca 678
Query: 61 agagaaggcatttgtttctttttcatcttttgtctgcagtgatgaacacagatgatgatt 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 677 agagaaggcatttgtttctttttcatcttttgtctgcagcgatgaacacagatgatgatt 618
Query: 121 tcttgattccgtaattacaccgtgtcttaaactagctctgctcaaaccattggtcagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcttgattccgtaattacaccgtgtcttaaactagctctgctcaaaccattggtcagttt 558
Query: 181 gtctctcttactcttctgttttcaagcaacatcaaactaagattgttaaagaaggaacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtctctcttactcttctgttttcaagcaacatcaaactaagattgttaaagaaggaacat 498
Query: 241 gggcagtggtgacccaacatgtgtttgagcgttcatcttaagcaatcacgtaagcaagac 300
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 497 gggcagtggtgacccaacatgtatttgagcgttcatcttaagcaatcacataagcaagac 438
Query: 301 atttacataaattca--atttgtgcaaccatgcagagagagtacactaaataattccagg 358
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 437 atttacataaattcataatttgtgcaaccatgcggagagagtacactaaataattccagg 378
Query: 359 acatgagtgtaaagaagtgacctttccctccaaatgaggaacttgcaggtcctcagcgag 418
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 377 gcatgagtgtaaagaagtgacctttccctccaaacgaggaacttgcaggtcctcagcgag 318
Query: 419 tgttctgcccggacacctc-ccccc-ccc--cacccccacagagggaaggatgcagcggt 474
||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||
Sbjct: 317 tgttctgcccggacacctctccccctccctccacccccacagagggaaggatgcagctgt 258
Query: 475 aatgccctgagcatcgatgcctgggaatcctgtcaatacaggggacagaggtgacac 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aatgccctgagcatcgatgcctgggaatcctgtcaatacaggggacagaggtgacac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 937
Length adjustment: 10
Effective length of query: 521
Effective length of database: 927
Effective search space: 482967
Effective search space used: 482967
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
