Query= MSMg01no495_c10.b1 MSMg01no495_c10.b1 CHROMAT_FILE:
MSMg01no495_c10.b1 PHD_FILE: MSMg01no495_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:10 2005
(245 letters)
>mm_chr5_151323058_151323702
Length = 645
Score = 435 bits (225), Expect = e-126
Identities = 240/245 (97%)
Strand = Plus / Minus
Query: 1 aaatctattattttcataaaaatgtatatgatgtgcactgcaccttgatggtcatatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatctattattttcataaaaatgtatatgatgtgcactgcaccttgatggtcatatata 386
Query: 61 tattgtaaatactgaataaaagtcttacagttagtatagtcataccctcacagagttacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattgtaaatactgaataaaagtcttacagttagtatagtcataccctcacagagttacc 326
Query: 121 ttctatgtccaggtgtgtgatggagagtatcaaatctcttctagcaaatctgtaggatgt 180
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctatgtctaggtgtgtgatggagagtatcaaatctcttctagcaaatctgtaggatgc 266
Query: 181 agttcaatattgtgtggataagaatctctaggggaaaaagctgtgtccacaaaggttgtt 240
||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct: 265 agttcaatattgtgtggatgagaatctctagggggaaaagctgtgtctacaaaggttgtt 206
Query: 241 gatta 245
|||||
Sbjct: 205 gatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no495_c10.g1 MSMg01no495_c10.g1 CHROMAT_FILE:
MSMg01no495_c10.g1 PHD_FILE: MSMg01no495_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:10 2005
(585 letters)
>mm_chr5_151167772_151168756
Length = 985
Score = 1035 bits (535), Expect = 0.0
Identities = 569/585 (97%), Gaps = 8/585 (1%)
Strand = Plus / Plus
Query: 1 gaataaagtcatatcatttatgtttaaatctgagcccagtacgaattagatgtgactgtt 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaataaagtcatatcgtttatgtttaaatctgagcccagtacgaattagatgtgactgtt 260
Query: 61 cctaatgtcattaatacatagaacacattctaacccccatcttacacattcaatagggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctaatgtcattaatacatagaacacattctaacccccatcttacacattcaatagggag 320
Query: 121 gagatgcctgaagaaaacttggcttcgaatataaactttaccttaaatagcttcgggggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagatgcctgaagaaaacttggcttcgaatataaactttaccttaaatagcttcgggggt 380
Query: 181 ttttattttctgttacacaattccatttgagaagggaccagaccctaccgcgtgtttccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 381 ttttattttctgttacacaattccatttgagaagggaccagaccctaccgcatgtacccc 440
Query: 241 cttcataatcttctcccctactcccccagatgcttcagggtgaggagcccagcatttgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcataatcttctcccctactcccccagatgcttcagggtgaggagcccagcatttgca 500
Query: 301 tcctccatgttaccctggtagcttccgttggtatgttctgcagagccaagttgatgaggg 360
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 501 tcctccatgttaccctggtagcttccgctggtatgttctgcagagccaagctgatgaggg 560
Query: 361 tcagagtgacttgtgtgaagaagagagctgtgcacacagtcgcatgttctcaaagtaaac 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagagtgacttgtgtgaggaagagagctgtgcacacagtcgcatgttctcaaagtaaac 620
Query: 421 ccacccatttaacattgatgccttagtctgtccacagcatgagacaggacaggctgggag 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 ccacccatttaacattgatgccttagtctgtctacagcatgagacaggacaggctgggag 680
Query: 481 gagcaggctgccttgggagcacaggcaggaagtctttggtatttatacttagttaacgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagcaggctgccttgggagcacaggcaggaagtctttggtatttatacttagttaacgta 740
Query: 541 gtcacccatatttatcaatatgccactgtggagtgatggggactt 585
||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 gtcacccatatttatca--------ctgtggagtgatggggactt 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
