BAC Information

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BAC

Clone NameMSMg01-495L12
Chromosome5 (Build37)
Map Location 32,793,716 - 32,877,417
singlet/doubletdoublet
Overlap genePpp1cb, LOC634553, LOC675983
Upstream geneXab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1, EG665350, LOC545743
Downstream geneYes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495L12.T7 (MSMg01no495_l12.b1)MSMg01-495L12.TJ (MSMg01no495_l12.g1)
ACCAG572696AG572697
length740788
length of high quality
(start - end)
325 (327 - 651)161 (94 - 254)
definitionCHROMAT_FILE: MSMg01no495_l12.b1 PHD_FILE: MSMg01no495_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:50 2005CHROMAT_FILE: MSMg01no495_l12.g1 PHD_FILE: MSMg01no495_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(32,793,716 - 32,794,040)(32,877,257 - 32,877,417)
sequence
CCTCTATATTTGCGGCCGCGAAACGAACCCCAATGACATTGGCGCGNGGA
ANNCNACAAATGCCACCACCAGAGTTGNNAAGGACATACTTCATAATATA
TAAGTGTGCACTGTATAACCATCCAGCCATTCGACACCCTTTATGATGTC
ACACCTTTAACTTAAGGAGACGGTAAAGGATCTTAAATTTTTTTCTAATA
GAAAGATGTGCTACACTGTATTGTAATAAGTATACTCTGTTATAATATTC
TTCAAAATTAAATCCAAATTCAAAAGTATCCATTAAAGTTCTATCTTCTC
ATATCACAGTTTTTATTAGTGNTTAAGCATCCCAGTTAAACTAGCCCTGT
TAGTGACTTATATGAAAGCATGAAGATCCATCTGTGTAATGTGGTTTTAG
TGGTGCTTGGTTGCCCCATTATTTTGAGCTTGTTTTGTTTTGTTTGTTTT
TGCTAGAATAATGGCATCTACTTTTCCTATTTTTCCCTAAACATTTTTAA
AAGTGAAAATGGGAAGAGCTTTAAAGACATTCACCAACTATTCTTTTCCT
TTACTTATCTACTTAAGTAACTGTTGGATCTTACTAAGAAAACTTACCCC
TCATTACAGTAAAAAGGAACTTTAGAGGTCGATAGGTTTTAAAAATATAC
AAACTATCTGATCCATTGATTTTAATCAAACAGTTTGACTGGGCAAACTT
TGCAGCTGATAATGAGTATTTCGCTTTTTACAAATTGCCA
NCCCTAATGCTGTGNGTAGGCCGGGNGGNCGCCCGGATGNTTCATTTGCG
GNGNAANNNANACAAGTTTAAACTATTGTTGTCTCNCNNGNNGGAACTCC
CATCTCTTATTTCCTCCCTTAGTTCATTTGCATAGGCATTTTTATTGGCA
AGTAAATGTTTTTACACAGTGCACAAGAGATTATCTCTACAAGTACTCTA
TGTGGAATTCTATAGACATCTAGAAAATCTTGCTTGAGCTGTCATAATTT
TGACCTTTTATCCAGACTACAGAATCTGCCTATTAAGATTAATTTTTTTA
GCTGAGTGATGGCGGAGCACGTTTTTATTCTAGNACTTGGGAGGCAGAGG
CAGGCAGANNNCTGTTTTTTACGCCAGCCTGGTGTACAGAGTGAGTTCCA
GGACAGCCAGGGCTACTTCCCCCCCCCCTTGTTTTTTAAAAACTATTACA
AAACACTCACCAACTCACTCACCTACCGATTGACTTTTTTTTAGTGTCTT
GGATTATTTTAAAACAATCTGGGCTTGCGCTGCCTTTCACCAATGCTACA
TACTTTTCCTACAACACCCCTATGTTTTGAAAATGCCCTCACGACTTATG
CCTCACTTTTTATCCCAGCCCCCTCCAATTCACCCCCCCTTTGTCCCCCC
AAACCCATTTTTTTTTTTTTTTTTTATATCTACCAGCACTGTCTCGCTCC
TCAATTTTCGACACCTCCCTACCGCCTCTCCGTCCCCTTATCTAACCTTC
CGATATTTTTATTCGGCTTTACTCTTTGTCATTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_l12.b1 MSMg01no495_l12.b1 CHROMAT_FILE:
MSMg01no495_l12.b1 PHD_FILE: MSMg01no495_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:50 2005
         (325 letters)



>mm_chr5_32793516_32794240
          Length = 725

 Score =  582 bits (301), Expect = e-171
 Identities = 319/325 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatcccagttaaactagccctgttagtgacttatatgaaagcatgaagatccatctgtg 60
           |||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||
Sbjct: 201 gcatcccagttaaactagccctgttagtgacccagatgaaagcatgaagatccatctgtg 260

                                                                       
Query: 61  taatgtggttttagtggtgcttggttgccccattattttgagcttgttttgttttgtttg 120
           |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 261 taatgtggttttagtggtgcttggttgtttcattattttgagcttgttttgttttgtttg 320

                                                                       
Query: 121 tttttgctagaataatggcatctacttttcctatttttccctaaacatttttaaaagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttgctagaataatggcatctacttttcctatttttccctaaacatttttaaaagtga 380

                                                                       
Query: 181 aaatgggaagagctttaaagacattcaccaactattcttttcctttacttatctacttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgggaagagctttaaagacattcaccaactattcttttcctttacttatctacttaa 440

                                                                       
Query: 241 gtaactgttggatcttactaagaaaacttacccctcattacagtaaaaaggaactttaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaactgttggatcttactaagaaaacttacccctcattacagtaaaaaggaactttaga 500

                                    
Query: 301 ggtcgataggttttaaaaatataca 325
           |||||||||||||||||||||||||
Sbjct: 501 ggtcgataggttttaaaaatataca 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no495_l12.g1 MSMg01no495_l12.g1 CHROMAT_FILE:
MSMg01no495_l12.g1 PHD_FILE: MSMg01no495_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:50 2005
         (161 letters)



>mm_chr5_32877057_32877617
          Length = 561

 Score =  296 bits (153), Expect = 5e-85
 Identities = 159/161 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaactcccatctcttatttcctcccttagttcatttgcataggcatttttattggcaagt 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 361 gaactcccatctcttatttcctcccttagctcatttgcataggcatttttattggcaagt 302

                                                                       
Query: 61  aaatgtttttacacagtgcacaagagattatctctacaagtactctatgtggaattctat 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaatgtttttacatagtgcacaagagattatctctacaagtactctatgtggaattctat 242

                                                    
Query: 121 agacatctagaaaatcttgcttgagctgtcataattttgac 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agacatctagaaaatcttgcttgagctgtcataattttgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)