Query= MSMg01no496_a07.b1 MSMg01no496_a07.b1 CHROMAT_FILE:
MSMg01no496_a07.b1 PHD_FILE: MSMg01no496_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:12 2005
(581 letters)
>mm_chr5_39238541_39239531
Length = 991
Score = 957 bits (495), Expect = 0.0
Identities = 564/591 (95%), Gaps = 10/591 (1%)
Strand = Plus / Plus
Query: 1 atgatcctggcctatcaaacaaaatagctacctgaccagagtttgatccccagtacccac 60
||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 201 atgatcccagcctatcaaacaaaatagttacctgaccagagtttgatccctagtacccac 260
Query: 61 actggagggcgaaaactgactcccctaaattgtcctcagacctccatacttgcacaaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actggagggcgaaaactgactcccctaaattgtcctcagacctccatacttgcacaaacc 320
Query: 121 aacagatggaccaaattagtaataagttaaaaaaat-ttaaaggaattttaagggccttg 179
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 aacagatggaccaaattagtaataagttaaaaaaaaattaaaggaattttaagggccttg 380
Query: 180 gataggtttgtttctgttggctcagtcctgcttggatggcgattttctctacccaggtga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gataggtttgtttctgttggctcagtcctgcttggatggcgattttctctacccaggtga 440
Query: 240 gtgatgctttttttaatgtggcatttgaagggtgtcctcaagcttgccacccgtgtgtgc 299
|| ||||| | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gtcatgctgtagctaatgtggcatttgaagggtgtcctcaagcttgccacctgtgtgtgc 500
Query: 300 --tcctgacatgtatt---cttacccttcagaacaggaagctggagagagagatggttgg 354
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcctgacatgtattaatcttacccttcagaacaggaagctggagagagagatggttgg 560
Query: 355 gtggtgaggccaggattgacttttagtctcagccaggtgtgtctgtaac----aagctgg 410
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 561 gtggtgaggccaggattgacttttaggctcagccaggtgtgtctgtaactaacaagctgg 620
Query: 411 atccctgctcacatctgtaatcccagttcccagtggggagaggcagggtcaatagatcct 470
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 621 atccctgctcacatctgtaatcccagttcccagtgaagagaggcagggttggtagatcct 680
Query: 471 tcctgggaggagcaggaagagtgatggagaacaacttccctctcccatgtctgctcgtaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcctgggaggagcaggaagagtgatggagaacaacttccctctcccatgtctgctcgtaa 740
Query: 531 gcgcatccaccacactcctgtgcacacacagtaagttcttatagaagatgg 581
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcgcatccaccacactcctgtgcacacacagtaagttcttatagaagatgg 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 991
Length adjustment: 10
Effective length of query: 571
Effective length of database: 981
Effective search space: 560151
Effective search space used: 560151
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_a07.g1 MSMg01no496_a07.g1 CHROMAT_FILE:
MSMg01no496_a07.g1 PHD_FILE: MSMg01no496_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:12 2005
(658 letters)
>mm_chr5_39441628_39442686
Length = 1059
Score = 1158 bits (599), Expect = 0.0
Identities = 644/659 (97%), Gaps = 1/659 (0%)
Strand = Plus / Minus
Query: 1 cttaagaaactgataaaagtgttatgaaaacatgagaaggatcagacaggaagaaagcaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 859 cttaagaaactgataaaagtgttatgaaaacatgagaaggataagacagaaagaaagcaa 800
Query: 61 atctgtcctttctgggcatcttctggaaaaaggaagatttcagttaagaacaggacatcc 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 799 atctgtcctttctgggcatcttctgggaaaaggaagatttcagttaagaacaggacatcc 740
Query: 121 accacagcctgggatggagtctgcagtcacacctccagaggacatgagaggcaagtaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 739 accacagcctgggatggagtctgcagtcacacctccagaggacatgagaggcaagcaagt 680
Query: 181 cacacaaatcacaaacaaaataccttcctaggaaacacatgctggcacattctatttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 679 cacacaaatcacaaacaaaataccttcctaggaaacacatgctggcacattctatctgat 620
Query: 241 ctttgttaccaagatgtagaacattcctcagccccccgccccatcccccc-ccctcccgc 299
| ||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| |
Sbjct: 619 caaggttaccaagatgtagaacattcctcagccccccgccccacccccccacccaccccc 560
Query: 300 accttggctctactgtgccattcaaggacaaggacatgcttagtcaattgtgttcagatc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 accttggctctactgtgccattcaaggacaaggacatgcttagtcaattgtgttcagatc 500
Query: 360 caagttccacatttatatcagagctcccattcccattcttgtttatctcttctttatctt 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 499 caagttccacatttatatcagagctcccattgccattcttgtttatctcttctttatctt 440
Query: 420 ataaacttgtttcaaaagagacggcaatcaactcattttccagtaaagtaaccactgtac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ataaacttgtttcaaaagagacggcaatcaactcattttccagtaaagtaaccactgtac 380
Query: 480 aaatcagttaggcaataattactttctgtagcatcacaattgtttgtggctcagctattc 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 379 aaatcagttaggcaataattactttctgtagcatcacaattgttggtggctcagctattc 320
Query: 540 gctgaatcactcaggcttgatgccacaaagtctgacattccaggaccagcttcctccctg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gctgaatcactcaggcttgatgccacaaagtctgacattccaggaccagcttcctccctg 260
Query: 600 ctccactcattggaggagcaagtaaaagtagcacttactaagcaacctttctaggattc 658
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctccactcattggaggcgcaagtaaaagtagcacttactaagcaacctttctaggattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space: 679752
Effective search space used: 679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
