BAC Information

Click to search

BAC

Clone NameMSMg01-496B05
Chromosome5 (Build37)
Map Location 78,371,392 - 78,371,640
singlet/doubletsinglet
Overlap genenone
Upstream genePpat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496B05.T7 (MSMg01no496_b05.b1)MSMg01-496B05.TJ (MSMg01no496_b05.g1)
ACCAG572969AG572970
length721733
length of high quality
(start - end)
665 (57 - 721)249 (333 - 581)
definitionCHROMAT_FILE: MSMg01no496_b05.b1 PHD_FILE: MSMg01no496_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:17 2005CHROMAT_FILE: MSMg01no496_b05.g1 PHD_FILE: MSMg01no496_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:17 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTTTGGGGNACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAAAATATTTGAACACGTTCCTTCCATCTGTCACC
ACACTGAACTGAGGTAACATTTTAAAACTTTATGCCATTCTATTCAGTGA
TTCTATGACTTACAGTAGTTTAAGAATGTATGATCTACACAAAGAAAAAC
AAAAGAAAGAACACACTTCTTAAGACTTCGGTGGGAATTAGTAATACTTT
AGAAAAGCACAGTGTAAGCTATGAAGTTTCCACATGAAGCCTGTACAACA
GCTACAGGAAAATATAGATTTTTCAACTGAAGGGCAAGGCCGGTCACTGT
CAGGTGGGTGGGCTCACATTCCAGGAACTTGCAACAGTGAGAGCTCAGAA
GTGATCTCTGAGAGGATCTCCCTCAGAATCCTCAGCCTGACTGCAATTTC
TGCGTGATGTTTTCTGGTGTATGTGAAGCCATGTCCCACAGTCCTGTGAT
GACTCCCCAACTGCACAGTCCTGTGATGACAACCCAACTGCACAGTCCTG
TGATGACTGACTCCCCAACTGCACAGTCCTGTGGTGACTCCCCAACTGCA
CAGTCCTGTGGTGACTGACTACCCAACTGCACAGTCCTGTGATGACTCCC
CAACTGCACAGTCCTGTGATTACTCCCCAACTGCACAGTCCTGTGATGAC
TACCCAACTGCACAGTCCTGT
NNNNNNNCCACTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACTGTGGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTCTTC
ATATCTATGTAGCCCTGGAGGCCCTCACACTCAAACATCTGCCTGTTTTT
CCCTCCAAAGTTCTGAAATTAAAAGCATGAGCCACTATGCCCAATGTTCA
AAACAATTATTTTATCAGTCAGCTGTTGATCATATGGATAACTTCATTGG
TCACTGAAAAAGGAAACAAGCCCATTATTTATACCAGGATAGAAGGGAAG
CTGGTGAATGGCTCTCAAGCCAGAGCTCAGAGATACAGGCAATGACTGTA
GTCCACATGAGCCTGTGCACCCAAGGGGTTAGACAGATGGGAAGCTGTGA
CTGGCTCTCAAGCCAGAGCTCTGGGATCCAGGCAATGATTGCAGTCCATG
AGCTTGCTCCTGCAAGGAGATCTGATTCTACTTTAGTGAAGCAGGCCAAT
CATTGTATCTGTCTCTGGATAACTTTCATCCTAAGACCCTGGTCACTGAG
ACTCTGTCATGCTTACTATTAAAAGTCAGATAGTTCAGGGAGAGCCTACT
ACAGCACTTCCCTTCAGTGAGAGGTCACCTGCTATTCTGAATGGATTGCA
GATCCTCGCCCACAAGAAAGTTATGAGTTGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_b05.g1 MSMg01no496_b05.g1 CHROMAT_FILE:
MSMg01no496_b05.g1 PHD_FILE: MSMg01no496_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:17 2005
         (249 letters)



>mm_chr5_78371192_78371840
          Length = 649

 Score =  435 bits (225), Expect = e-126
 Identities = 243/249 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggatagaagggaagctggtgaatggctctcaagccagagctcagagatacaggcaa 60
           ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct: 449 accaggatagaagggaagctggtgaatggctctcaagccagtgctctgggatacaggcaa 390

                                                                       
Query: 61  tgactgtagtccacatgagcctgtgcacccaaggggttagacagatgggaagctgtgact 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 389 tgactgtagtccacatgagcctgtgcacccaaggagttagacagatgggaagctgtgact 330

                                                                       
Query: 121 ggctctcaagccagagctctgggatccaggcaatgattgcagtccatgagcttgctcctg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggctctcaagccagagctctgtgatccaggcaatgattgcagtccatgagcttgctcctg 270

                                                                       
Query: 181 caaggagatctgattctactttagtgaagcaggccaatcattgtatctgtctctggataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 269 caaggagatctgattctactttagtgaagcaggccaatcattgtatctgtctctggatac 210

                    
Query: 241 ctttcatcc 249
           |||||||||
Sbjct: 209 ctttcatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)