BAC Information

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BAC

Clone NameMSMg01-496I02
Chromosome5 (Build37)
Map Location 74,890,635 - 74,891,305
singlet/doubletsinglet
Overlap geneScfd2
Upstream geneDcun1d4, BC031901, Sgcb, Spata18, Usp46, 2700023E23Rik, Rasl11b
Downstream geneFip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496I02.T7 (MSMg01no496_i02.b1)MSMg01-496I02.TJ (MSMg01no496_i02.g1)
ACCAG573294AG573295
length743666
length of high quality
(start - end)
661 (53 - 713)63 (78 - 140)
definitionCHROMAT_FILE: MSMg01no496_i02.b1 PHD_FILE: MSMg01no496_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:51 2005CHROMAT_FILE: MSMg01no496_i02.g1 PHD_FILE: MSMg01no496_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAGTTATCTTCCTGCCTCTGCCTCCAGAGTTAAAGGC
AGATGGCTTCCTCATATTGGATGACTTCTTTTTTTTTTTTTTTCTTTTTT
GTTTTGTTTTTTTGTTTCTTTAGACAGGGCTTCTCTCTGTAGCCCTGGCT
GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCG
TCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGGATGTGCCACCACACT
CAGCTAGACTGCATGATTTCATAATTGATAGTTTATTATCTTTTTTTTTC
CTCTGTCCAGATGCTTGTGAGAGAAACTCTACATCCAGCCTCTTCACTCT
TCTATGCTATCAAACCCTGCTGCAGAGCCCAGAAGGTCCAGGATGGTGAC
ATCAGTTAAAGCTAGAGTATTTCTGTTCTTAATGTCCCATTGCTACCTTT
ATCCCCAAATTTACTAAGACAATTTCCTGCTAGTGGCAAGCATTATAAAC
GTAAAATAGGAAGAGATATTTAAACAGGGTCACATTTGCTAGGGTGTCCA
TGGGGAACACCATTTATTTGAACCTAGAATATTATAACATAGGTTCTTTT
TTTTACAGCAGTATGCATTGACTTGTAATTCTTTTTTTTTTTATTTATTA
TGNATTTTCCTCAATGACATTTCCAATGCTATCTCAAAAGTCC
ATGAGAGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGATAAGCAATATGATTACA
TTAAACCTGGCCATGCAATTGGCAGTTGAAATCATTACCTAATGAAGGCT
TAAAAAATTTTTTTNNNNAAACAAATGAGATTATCTTTTTTAACACTTAT
TTCTTTAAATAAATAAAAGTTTGAAAAAAAAAGGCAATTTTATTTCAGTT
TCTTTCTGGTAATACAAATACCCTCTGAACTAGATCCTATTTTCATTCAT
AAAAGCTCTTTACCGGAAATTTTATAATAATTGGGGGGGGAAAATTTTAT
GGCCCCCATATTTTTCCGCCAAAATTTTTCCCGCCAAAAATTTGGGTTTG
TTTTTAAAAAAAAAGGCCCAAATTTTTTTTGGGTTCCACAAACTCTTTTT
AAAAAAAGGTGGGAACCCCCCCGAAAACAAGGGGGGTTTTTCCCCCCCTC
GAGGGTTTTTTTAAAACNAAAAACACAAAAAATCTAAGAACCCCCCTTCT
TTTTTTTTTTCTCCCCCCCCCTTTTTTTTTGGGAGCCCCCCCCCCTCCTC
GGGGGGGGGGGGGGGCCTCTTCCTCCCCCCCCGGGGGGGGGGGGGGTTTT
TTTTTTTTAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_i02.b1 MSMg01no496_i02.b1 CHROMAT_FILE:
MSMg01no496_i02.b1 PHD_FILE: MSMg01no496_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:51 2005
         (661 letters)



>mm_chr5_74890252_74891312
          Length = 1061

 Score = 1168 bits (604), Expect = 0.0
 Identities = 649/671 (96%), Gaps = 13/671 (1%)
 Strand = Plus / Minus

                                                                        
Query: 4    ggaattctcagttatcttcctgcctctgcctccagagttaaaggcagatggcttcctcat 63
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 ggaattctcagcaatcttcctgcctctgcctccagagttaaaggcagatggcttcctcat 995

                                                                        
Query: 64   attggatgacttctttttttttttttttcttttttgttttg--tttttttgtttctttag 121
            |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 994  attggatgacttctttttttttttttttcttttttgttttgtttttttttgtttctttag 935

                                                                        
Query: 122  acagggcttctctctgtagccctggctgtcctggaactcactttgtagaccaggctggcc 181
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  acagggtttctctctgtagccctggctgtcctggaactcactttgtagaccaggctggcc 875

                                                                        
Query: 182  ttgaactcagaaatccgtctgcctctgcctcccgagtgctgggattaaagggatgtgcca 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  ttgaactcagaaatccgtctgcctctgcctcccgagtgctgggattaaagggatgtgcca 815

                                                                        
Query: 242  ccacactcagctagactgcatgatttcataattgatagtttattatctttttttttcctc 301
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  ccacactcagctagactggatgatttcataattgatagtttattatctttttttttcctc 755

                                                                        
Query: 302  tgtccagatgcttgtgagagaaactctacatccagcctcttcactcttctatgctatcaa 361
            || |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 754  tgaccagatgcttgtgagagaaactgtacatccagcctcttcacttttctatgctatcaa 695

                                                                        
Query: 362  accctgctgcagagcccagaaggtccaggatggtgacatcagttaaagctagagtatttc 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694  accctgctgcagagcccagaaggtccaggatggtgacatcagttaaagctagagtatttc 635

                                                                        
Query: 422  tgttcttaatgtcccattgctacctttatccccaaatttactaagacaatttcctgctag 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  tgttcttaatgtcccattgctacctttatccccaaatttactaagacaatttcctgctag 575

                                                                        
Query: 482  tggcaagcattataaacgtaaaataggaagagatatttaaacagggtcacatttgctagg 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574  tggcaagcattataaacgtaaaataggaagagatatttaaacagggtcacatttgctagg 515

                                                                        
Query: 542  gtgtccatggggaacaccatttatttgaacctagaatattataacataggttcttttttt 601
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 514  gtgtccatggggaacaccatttatttgaacctagaatattataacgtaggttcttttttt 455

                                                                        
Query: 602  t--------acagcagtatgcattgacttgtaattcttttttttttt---atttattatg 650
            |        ||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 454  tttttttttacagcagtatgcattgacttgtaattcttttttttttttttatttattatg 395

                       
Query: 651  nattttcctca 661
             ||||||||||
Sbjct: 394  tattttcctca 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)