BAC Information

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BAC

Clone NameMSMg01-497A08
Chromosome5 (Build37)
Map Location 152,344,519 - 152,345,014
singlet/doubletsinglet
Overlap geneEG632649
Upstream geneBrca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877
Downstream geneEG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497A08.T7 (MSMg01no497_a08.b1)MSMg01-497A08.TJ (MSMg01no497_a08.g1)
ACCAG573688AG573689
length751749
length of high quality
(start - end)
612 (53 - 664)563 (83 - 645)
definitionCHROMAT_FILE: MSMg01no497_a08.b1 PHD_FILE: MSMg01no497_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:33 2005CHROMAT_FILE: MSMg01no497_a08.g1 PHD_FILE: MSMg01no497_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:33 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTT
TTAGATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGACTGGGT
GAAGTGAGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGTTTCTGTT
AGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAG
TTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTAC
CCTCAATCAGCAGGCGTGGGAGACAAGCTCTCTCCTCTGAATTTCAGTGG
TCAGAGCAGTCTCTGCAGGCAAGCTCTCCTCTTTCGGGGAAGGTGTACAG
TTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAG
GATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCTGTTGTC
TGGAGCCGAAGATGGCGCCGCCTCAGAAGCTCTGTGGCTCTCGCCAGGAA
GGTGGCCTGTTGTCTGGAGCCGAAGATGGCGCCGCCCTAGAAGCTCTGCG
ACTCTCGCCCGTCCCAGAAACGGCTGGCCTCTGTATTCCACACGGTCTCC
CGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTCTCGTCGG
CGCCTGTGACACAAACCTCTCAGGCCGGGCAGACCCCCGTGCTCTCCAGT
A
NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACACCAATTTTCACA
GTCGCTGCATGAGTTTATAGTCCCAACAATGAGAAATGAGGATTTCCATT
TTCTCTGAGTCAACTCCAGTACTTGTTGCTTTTTCTGTGAATTTTTGATT
TTCTTTCTGGCTTAAGGTGAAATCTCAAGGTTGTTTTAATTTACCTTTCC
ATAATTGTTAGGGTTAATGAATATTTTTATGAAATGTTTGCTAGCCATTT
GTTTCTTTGTTTCTATATTTGAGAATTCTCATCTCCCAGCTATATTTTTT
CTTTAATTAGCCATTTGTTTTTGGCTGTAGCACAGGAGAGGCCATTTGGG
CTAGATGATATGTAAGAATGTTTTTGGAGGAAATCTAGTGGTTGTTTGTG
GTGTAAACAGAGTCTCCAGACTCTGCTTTAATGTGGGACATCTGTAAATA
AGGGGGAATTTTATGGGTGGGATTGTCAGAGAGATTCACTTGGCTGGCTC
TAGAAGAAATGGCAGAAGATATAGATGTCTGGAAAATATTGAATGGGGAG
TAGAAGAACCTGTGGGTGATGGTAAGTATGAGAGTTCCTTGAAGAACATA
GACCCTGGCTGTATTGTACATAATTTTGGTCAGACTAAGCTGGAAAAATG
GATGTAGGGGCTGGGAAAGCAAAGTCACAAATTTGAGAGTGGACACAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_a08.g1 MSMg01no497_a08.g1 CHROMAT_FILE:
MSMg01no497_a08.g1 PHD_FILE: MSMg01no497_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:33 2005
         (563 letters)



>mm_chr5_152344052_152345014
          Length = 963

 Score =  951 bits (492), Expect = 0.0
 Identities = 495/496 (99%)
 Strand = Plus / Minus

                                                                       
Query: 68  tttctctgagtcaactccagtacttgttgctttttctgtgaatttttgattttctttctg 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 tttctctgagtcaactccagtacttgttgctttttctgtgaatttttgattttctttctg 904

                                                                       
Query: 128 gcttaaggtgaaatctcaaggttgttttaatttacctttccataattgttagggttaatg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gcttaaggtgaaatctcaaggttgttttaatttacctttccataattgttagggttaatg 844

                                                                       
Query: 188 aatatttttatgaaatgtttgctagccatttgtttctttgtttctatatttgagaattct 247
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 843 aatatttttatgaaatgtttgctggccatttgtttctttgtttctatatttgagaattct 784

                                                                       
Query: 248 catctcccagctatattttttctttaattagccatttgtttttggctgtagcacaggaga 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 catctcccagctatattttttctttaattagccatttgtttttggctgtagcacaggaga 724

                                                                       
Query: 308 ggccatttgggctagatgatatgtaagaatgtttttggaggaaatctagtggttgtttgt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ggccatttgggctagatgatatgtaagaatgtttttggaggaaatctagtggttgtttgt 664

                                                                       
Query: 368 ggtgtaaacagagtctccagactctgctttaatgtgggacatctgtaaataagggggaat 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggtgtaaacagagtctccagactctgctttaatgtgggacatctgtaaataagggggaat 604

                                                                       
Query: 428 tttatgggtgggattgtcagagagattcacttggctggctctagaagaaatggcagaaga 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tttatgggtgggattgtcagagagattcacttggctggctctagaagaaatggcagaaga 544

                                                                       
Query: 488 tatagatgtctggaaaatattgaatggggagtagaagaacctgtgggtgatggtaagtat 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tatagatgtctggaaaatattgaatggggagtagaagaacctgtgggtgatggtaagtat 484

                           
Query: 548 gagagttccttgaaga 563
           ||||||||||||||||
Sbjct: 483 gagagttccttgaaga 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)