Query= MSMg01no497_c01.b1 MSMg01no497_c01.b1 CHROMAT_FILE:
MSMg01no497_c01.b1 PHD_FILE: MSMg01no497_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:42 2005
(712 letters)
>mm_chr5_70858047_70859158
Length = 1112
Score = 1212 bits (627), Expect = 0.0
Identities = 689/711 (96%), Gaps = 3/711 (0%)
Strand = Plus / Plus
Query: 5 gaattc---tttctgtaaatgaaagtttggagtttaggctactaggtatcacttcaaatc 61
|||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcaagtttgtgtaaatgcaagtttggagtttaggctactaggtatcacttcaaatc 261
Query: 62 atgtagcttgtgacatgtatactttgtaacacttaaggctgacagtcaataatttaaaat 121
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttgtagcttgggacatgtattctttgtaacacttaaggctgacagtcaataatttaaaat 321
Query: 122 cttggatgtctagttaaaagtaacataagatattttaaaagcaatttgacaattggtatg 181
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttggatgtctagctaaaagtaacataagatattttaaaagcaatttgacaattggtatg 381
Query: 182 aattttatgtctcagtgtttactttcaaatactatatgaacaaatctagacaaaggcatc 241
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cattttatgtcttggtgtttactttcaaatactatatgaacaaatctagacaaaggcatc 441
Query: 242 tactatgctttttgtaggttcaatcgttcagtgtagaactaggagaagaagaatgaatca 301
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 tactatgccttttgtaggttcaattgttcagtgtagaactaggagaagaagaatgaatcg 501
Query: 302 aacacattattaccaaacaattatcaatcacgaagaagcatttgttgactgagtgccagt 361
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 502 aacacattattaccaaacaattaacaatcacgaagaagcatttgttgactgagtgccagt 561
Query: 362 cgggaatattttcattccattatttttgtttgttttacctaacaaattatagaagttgtt 421
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 562 cgggaatattttcattccattattcttgtttgttttacctaacaaattatagaagttgtt 621
Query: 422 tgtagctgtgtttcctcaagtctaaagcagagatactaaagttatggatctgaaatttca 481
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 622 tgtagctgtgtttcctcaagtctaaagcagaaatactaaagttatggatctgaaatttca 681
Query: 482 tattaatcacatacatccttatattttacttgtttatatactacttgaaattaaaggatt 541
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 682 tattaatcacatacatccttatattatacttgtttatatactacttgaaattaaaggatt 741
Query: 542 aaacatgaagtgtctcattttagccagtttcttaggacattcgttgtgaagcactgacag 601
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 742 aaacatgaagtgtctcattttagccagtttcttaggacattcattgtgaagcactgacag 801
Query: 602 ggcataaactcatccatgcaatggcgagttgaggcatttgctatggtatccttgtaactc 661
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 802 ggcataaactcatccatgcaatggcgagttgaggcatttgatatggtatccttgtaactc 861
Query: 662 tcatgcaaaggtctcttttccttctgagtttaaatattgatacttgacatt 712
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 862 tcatgcaaaggtctcttttccttctgagtttaaatgttgatacttgacatt 912
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space: 773604
Effective search space used: 773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no497_c01.g1 MSMg01no497_c01.g1 CHROMAT_FILE:
MSMg01no497_c01.g1 PHD_FILE: MSMg01no497_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:42 2005
(673 letters)
>mm_chr5_70872336_70873411
Length = 1076
Score = 1241 bits (642), Expect = 0.0
Identities = 667/676 (98%), Gaps = 3/676 (0%)
Strand = Plus / Minus
Query: 1 atcaccagtgcactgatttgttcgattagaatgaaaaaggtcactttcattatttttacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 atcaccagtgcactgatttgttcgattagaatgaaaaaggtcactttcattatttttacc 817
Query: 61 tctttaatcttgctttctcctttgaagagattgaatgcatcttgaaaagactctttccct 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 816 tctttaatcttgctttctcctttgaagaaattgaatgcatcttgaaaagactctttccct 757
Query: 121 gttttatatgaatcaatttgattccatatgaatagtctttgcttggcttttcaatgtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gttttatatgaatcaatttgattccatatgaatagtctttgcttggcttttcaatgtgct 697
Query: 181 taaaatggatataatatgacaggcatacattgtgtatctattttgtcctgaagaatatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 taaaatggatataatatgacaggcatacattgtgtatctattttgtcctgaagaatatcc 637
Query: 241 tagggaagatttacatataacctctttacagcattgggaacataccagttatcatatctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tagggaagatttacatataacctctttacagcattgggaacataccagttatcatatctg 577
Query: 301 acaatgattctaaattatct--ttctctgtgtccattccctttttccaattgattctgaa 358
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 576 acaatgattctaaattatctctttctctgtgtccattcccttcttccaattgattctgaa 517
Query: 359 tttgttaagaaaagactgtaacatcagtttgtattctctatgaataaaaatggcagtact 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tttgttaagaaaagactgtaacatcagtttgtattctctatgaataaaaatggcagtact 457
Query: 419 tagctttcactcaaccaaatttattagctaaatgaatgaaatgactgtattatacgagag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tagctttcactcaaccaaatttattagctaaatgaatgaaatgactgtattatacgagag 397
Query: 479 gattatttactaatttatactgtatactctacatctatttttttt-catggtgccaggaa 537
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 396 gattatttactaatttatactgtatactctacatctatttttttttcatggtgccaggaa 337
Query: 538 attattgcatttctacatcaggaatccattattccaataatacactgggaaagggtacaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 attattgcatttctacatcaggaatccattattccaataatacactgggaaagggtacaa 277
Query: 598 agctgaaatgctgattttgctgttgttattttcttttatagatggataaagcaaagctga 657
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 276 agctgaaatgctgattttgctgttgttattttcttatatagatggataaagtgaagctga 217
Query: 658 gaaacatgctgtcatc 673
|||| |||||||||||
Sbjct: 216 gaaaaatgctgtcatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1076
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1066
Effective search space: 706758
Effective search space used: 706758
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
