Query= MSMg01no497_e17.b1 MSMg01no497_e17.b1 CHROMAT_FILE:
MSMg01no497_e17.b1 PHD_FILE: MSMg01no497_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:56 2005
(630 letters)
>mm_chr5_132475936_132476965
Length = 1030
Score = 922 bits (477), Expect = 0.0
Identities = 595/647 (91%), Gaps = 32/647 (4%)
Strand = Plus / Plus
Query: 5 gaattctaggtagtctcaataacatatgtatggaggagggttgactgcatatcatcccat 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggtaggctaaataacatatgtatggaggagggttgactgcatatcatcccat 264
Query: 65 gttctcaggagccacaacgaggcactggatccccgggagttagagttgcaggtggctgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttctcaggagccacaacgaggcactggatccccgggagttagagttgcaggtggctgtg 324
Query: 125 gtgctgggatccacacaagggtactctgcaaggcagcaagcactcagttactgagttctc 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 gtgctgggatccacacaagggtactctgcaaggcagcaagcactcaattactgagttctc 384
Query: 185 tctccagccccggttctcatatccatacgacagtcagaatcacagatacaaatgcatgag 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctccaaccccggttctcatatccatacgacagtcagaatcacagatacaaatgcatgag 444
Query: 245 caggaaccttcccaaggcagagagagaagcaactgtaggtcacagcatggtggtagctca 304
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 445 caggaaccttcccaaggcagagagagaagcaaccgcaggtcacagcatggtggtagctca 504
Query: 305 cctgcttataaaaacaaccagtatctgttggccatgagctctatagcaccccctgccccc 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgcttataaaaacaacccgtatctgttggccatgagctctatagcaccccctgccccc 564
Query: 365 aaaatgactcatgtgaggtatcaaacacacacacacaca--gacaca--cacacaca--- 417
|| |||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 565 aatatgactcatgtgaggtatcaaacacacacacacacacagacacagacacacacagac 624
Query: 418 -cacacacacagaca----cacacacacatacacacacacacacacagaca--cacacag 470
|||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||
Sbjct: 625 acacacacacagacatacacacacacacagacatacacacacacacagacatacacacac 684
Query: 471 actca--cacacacacacacagacacacacatacacacagacacacacacacacacagca 528
|| || |||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct: 685 acacagacacacacacacacagacacacaca----cacagactcacacacacacacag-a 739
Query: 529 cacacagacacacacag-cacacacacacacaccatacacacag-acacacaaacacaca 586
|||||| | |||||||| |||||| || ||||| |||||||| ||||||| |||||||
Sbjct: 740 cacacacatacacacagacacacagactcacac---acacacagcacacacagacacaca 796
Query: 587 caccacacacagacacacagacacacac---acacac---cacacac 627
||||||||||||||||||| ||||| || |||||| |||||||
Sbjct: 797 caccacacacagacacacacacacataccatacacacaaacacacac 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 254
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_e17.g1 MSMg01no497_e17.g1 CHROMAT_FILE:
MSMg01no497_e17.g1 PHD_FILE: MSMg01no497_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:56 2005
(615 letters)
>mm_chr5_132536335_132537349
Length = 1015
Score = 1143 bits (591), Expect = 0.0
Identities = 609/615 (99%)
Strand = Plus / Minus
Query: 1 tccattggaaagttggttctgttaactttcaagtgtgtgtacatcaaagccaccataaga 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 815 tccattggaaagttggttctgttaacttgcaagtgtgtgtacatcaaagccaccataaga 756
Query: 61 ataaatttaagcctgatagtgtacgcagcttcagtacacattggcgaaatatcctgctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ataaatttaagcctgatagtgtacgcagcttcagtacacattggcgaaatatcctgctga 696
Query: 121 ttgctgattacaaacagttgttaattctctacttcactaaattcagagtggagaaacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgctgattacaaacagttgttaattctctacttcactaaattcagagtggagaaacttt 636
Query: 181 ccttaataaagaacagattgaggagatccaagacctcactgtgtgggaattaatggcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ccttaataaagaacagattgaggagatccaagacctcactgtgtgggaattaatggcaga 576
Query: 241 tgcatacactggtagttaaaatgtttcattagatgttaatgtcttgctgtgtttttaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgcatacactggtagttaaaatgtttcattagatgttaatgtcttgctgtgtttttaatt 516
Query: 301 gttcaggaattagcctctagaatattaaaaccatctgtttgttatcatgatgaaacagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gttcaggaattagcctctagaatattaaaaccatctgtttgttatcatgatgaaacagaa 456
Query: 361 tgcttaaatagttattaatttgtgtttcttctctctttttgaggaataatctgtaaaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgcttaaatagttattaatttgtgtttcttctctctttttgaggaataatctgtaaaact 396
Query: 421 ttgatccgttgggagtattgggaatttgaatggggaagtaaagaattttaaagtgtaccc 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 395 ttgatccgttgggagtattgggaattcgaatggggaagtaaagaattttaaagcataccc 336
Query: 481 atgctttgaatagctgagctgccttcttttatatgagcctggtgtgggtgtttagatccc 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atgctttgactagctgagctgccttcttttatatgagcctggtgtgggtgtttagatccc 276
Query: 541 ctcctgctctcctccgttgtttctcccctcggcccttttcttgctctattctttgtagag 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 275 ctcctgctctcctccgttgtttctcccctcggcccttttctttctctattctttgtagag 216
Query: 601 atataaatttaggag 615
|||||||||||||||
Sbjct: 215 atataaatttaggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
