NCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCCGCGG
AATTCTGAATTTTACTTTTAAGGTGAGTGGGTGGCACTATCCCTCAACTG
GGGGCCATGCCTGTCCCCTGGATATGGTCTCTGCAGGTTTTATTTTCTCC
TTGTTGGGTATTTTGGCTAAAGCCCTTCCTATTGGGTCCTAGGACACTCT
TGGGTCCCTAGCGTATGGGACATTCTAGTGGCTACTACCAGTTCTCCCTT
CCCCCCACTGCTATACACCTTCTTTCCAAATTCTGGACCCTCTATACCCA
CTGATCTCCTCCCATATCTGAACTGGCTCCCCTTTTTCCCTCCCCCTTCA
CGTCTAATAAAATTCTAGTGACTTTCTGGAGAGTATTTTCAGGTACAAAA
TGAAATATTAGTGCTAAAACAGAAAAATAGAGTAGGATAGATATCCATGA
GGGTGAAGTGTTTTAGAATGTTGTGTGTGCCAGTGTCAGAGACAACTTAA
ATGTCTAAGTTTTTGTGAAATGACTTAGATAAAAAAGCTCCAGAGAAATG
CTTTCAAAAATCACTCTGTTGGCCTACAAAAGCAGGAACTTTGATATGCC
TACTGAAGATCATGATGCTACATTTTTGGTATGCAATTACAAATTTTGGT
AAAATTGCAGAGCCTAATATTTCTTCCTAGTTCCTGACTGCGATCATTTA
TTTAGAGATTTGTACCCATTTATGGGGGGGCCAGGGGGGGAAATGCTAAG
TAAAGAAACAAACAAAGTTTTTTCCCA

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCGCAAAATGCACGCAGNTGAATCCTTCTCAACAGTCTGT
GTTGTGGGAACACTTCATTACCACCATTCCCCAGCTGAAGAGTTCTGAAT
TCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACCTATATGA
CCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCTTTTGT
GATGGTAACCGTCCCAGGTTTTCTCGTCCCAGGATTTCTCGTCCCAGGTC
TTCTCGTCCCATGNCTTCNTGTCCCAGGTCTTCTCGTCCCAGGTCTTCTC
ATCCCGGTTACTCTCGTCCCAGGTCTTCTCGTCCCGGGTTTCAGCACCAA
CTCTTACCCGCGTTTCATGCGACCGGCCAGGAAAGACGCAGCAAACCAGA
ATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGCGAGCA
AGAGCAAGAGCAAGAGCTAGAAAGCTTGAAAAAGAACATGAACAAGAAAG
CTAGAGAAAGAAAAAGAATGGCCAAATCCCGTCCCTTTTAAGGAGAATTA
TCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCTGTTC
AGTTGTCATCACGAGATAGGCAGAATACATGGCGGGAAAACTGCCCCTTG
CACGTGTGCAAATTAGTTTTCTACTTAAAACCAGCTGTCAGCGGCATCTT
ATTTTN

Query= MSMg01no497_f14.b1 MSMg01no497_f14.b1 CHROMAT_FILE:
MSMg01no497_f14.b1 PHD_FILE: MSMg01no497_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:00 2005
         (581 letters)



>mm_chr5_55960567_55961547
          Length = 981

 Score =  930 bits (481), Expect = 0.0
 Identities = 494/499 (98%), Gaps = 2/499 (0%)
 Strand = Plus / Minus

                                                                       
Query: 85  tgttgggtattttggctaaagcccttcctattgggtcctagg--acactcttgggtccct 142
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 981 tgttgggtattttggctaaagcccttcctattgggtcctaggacacactcttgggtccct 922

                                                                       
Query: 143 agcgtatgggacattctagtggctactaccagttctcccttccccccactgctatacacc 202
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 921 agcgtatgggacattctagtggctactaccagttctccctcccccccactgctatacacc 862

                                                                       
Query: 203 ttctttccaaattctggaccctctatacccactgatctcctcccatatctgaactggctc 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttctttccaaattctggaccctctatacccactgatctcctcccatatctgaactggctc 802

                                                                       
Query: 263 ccctttttccctcccccttcacgtctaataaaattctagtgactttctggagagtatttt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccctttttccctcccccttcacgtctaataaaattctagtgactttctggagagtatttt 742

                                                                       
Query: 323 caggtacaaaatgaaatattagtgctaaaacagaaaaatagagtaggatagatatccatg 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggtacaaaatgaaatattagtgctaaaacagaaaaatagagtaggatagatatccatg 682

                                                                       
Query: 383 agggtgaagtgttttagaatgttgtgtgtgccagtgtcagagacaacttaaatgtctaag 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agggtgaagtgttttagaatgttgtgtgtgccagtgtcagagacaacttaaatgtctaag 622

                                                                       
Query: 443 tttttgtgaaatgacttagataaaaaagctccagagaaatgctttcaaaaatcactctgt 502
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 tttttgtgaaatgacttagataaaaaagctccagagaaatgctttcaaaagtcactctgt 562

                                                                       
Query: 503 tggcctacaaaagcaggaactttgatatgcctactgaagatcatgatgctacatttttgg 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggcctacaaaagcaggaactttgatatgcctactgaagatcatgatgctacatttttgg 502

                              
Query: 563 tatgcaattacaaattttg 581
           ||||||||||||| |||||
Sbjct: 501 tatgcaattacaagttttg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)