BAC Information

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BAC

Clone NameMSMg01-497N03
Chromosome5 (Build37)
Map Location 75,380,041 - 75,545,301
singlet/doubletdoublet
Overlap geneChic2, Gsh2, LOC100039083, Olfr1401-ps1
Upstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1, EG619945
Downstream genePdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497N03.T7 (MSMg01no497_n03.b1)MSMg01-497N03.TJ (MSMg01no497_n03.g1)
ACCAG574295AG574296
length759758
length of high quality
(start - end)
588 (77 - 664)630 (77 - 706)
definitionCHROMAT_FILE: MSMg01no497_n03.b1 PHD_FILE: MSMg01no497_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:38 2005CHROMAT_FILE: MSMg01no497_n03.g1 PHD_FILE: MSMg01no497_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,544,714 - 75,545,301)(75,380,041 - 75,380,670)
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAGAAGGCGCG
GAATTCAAGCCNCTTCTGAAAAGAGCAGTTACAGCCACCAAAGCCATTAC
CTGTGAAAATTCACATTCAAACAAACTTGTTAATTTCTTTCAAATAAAGA
CGCCGCGGGCAAGTCGGGATGCAAGGGGCGGGTGTGTGTGTCTGGTTTCT
TGTTTGAAAATAACGGGGCATTTGGTCTAGAGCAAAAGAAAAAGCCTTTG
ACTGCCCCTTTAACTCCTGATTGCGTCGGGAGGAGGTTCCTCCCAGGGCT
GGGGGAGCCTGGAGCATTTTTTATATGCGGCAACCAGATGTTGGAGTCCC
TGCGGAGAGATGGAGCAGGGCTCCACCCCAACTCTGAAGCAGCCAGAGCT
GAGGGGTAGCCCACTCTCTCAAGAAGAGAAAAAGGCGCTCTGCAGAATCC
AGAGGACTAGTATAACCAGTTACCCTCTCTCCACGACTTGTCGCCTACCT
CCTCAGCGGGCGGTGGCTAGCTTACAGGGCCTCCCGGGATTTCCAGGGGG
TAGTGGAAAGCAGTTGCCTGAGTCCATAGCCCCGGGCATTCTCTCTAGGG
TTCCTAATACAACAGCCGGTGATGGCCCTAATTGAAGAGCTTGTCTCCGT
GGTACGTCCTAGACGAGGAGGGCCCTATCCTCCTCTGCTCTCTGAATAGC
TGTGGCTGGACCGGACCGCGGGGGATCTGGTCGTCCGATTCCCTCTTCTT
CTGCAGAGA
CTCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCACTCATTCGCCCCTTAAGGGA
GCATAGAGCTGCTGAGGCTACCCTGTGGGCTTTTGAAATGGACACAGTCA
AAAGGCAGAGTTCTCTTTAGAAATCACCATGAAGTGAAAAGATGGCCACA
TCACTTTTGGAACAAGACCTAGATCTTTCCTTCACATATCAGACTTCTAA
ATGCCATTCGCCCAGCTTGCTGCCCCTGGGACCTCATTCCCACAGGAGGG
GGTGTGGGTTTGAGGCTGCTATTCGGCTAATTCTTAACAGCCCTGTGCAG
GAATCTAGGAGGAATGTGCGCAGTGCTCAATACAAAGCTCATTTGGCTTC
AGGGACCATTTTAATTAAACTAATTATCTCTAGAAGAAACACTTGGAGCT
TCTTAGGGCTAAACAATAGGTACTTGTTCTCAGTTCTAATACAAGTCCGT
TGTTCAGAGAATCCTCTTATGAGCTGAAGACAATATCTCACCAGATACTT
AAAAACCACACACTCCGAGTCTACCTTCAATGTCTCCTGCTCTGTCCTGC
ACTCAGTGGAGAGACGTTTACAAATAGCTGATAGCCCGGCAGAAAAATGC
CCGTGCAAACCTACNAACTCCCTCCCACCCTTTTCTGTTGGTCTGCCTCA
TATTCCCTATAACCTTCTAGGCTACCTTCTGCCAGAAGAAGAAGAAAGGA
GGTAGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_n03.b1 MSMg01no497_n03.b1 CHROMAT_FILE:
MSMg01no497_n03.b1 PHD_FILE: MSMg01no497_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:38 2005
         (588 letters)



>mm_chr5_75544514_75545501
          Length = 988

 Score = 1044 bits (540), Expect = 0.0
 Identities = 576/588 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttacagccaccaaagccattacctgtgaaaattcacattcaaacaaacttgttaattt 60
           ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 agttacaaccaccaaagccgttacctgtgaaaattcacattcaaacaaacttgttaattt 729

                                                                       
Query: 61  ctttcaaataaagacgccgcgggcaagtcgggatgcaaggggcgggtgtgtgtgtctggt 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 728 ctttcaaataaagacgccgcgggcaagtcgagatgcaaggggcgggtgtgtgtgtctggt 669

                                                                       
Query: 121 ttcttgtttgaaaataacggggcatttggtctagagcaaaagaaaaagcctttgactgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ttcttgtttgaaaataacggggcatttggtctagagcaaaagaaaaagcctttgactgcc 609

                                                                       
Query: 181 cctttaactcctgattgcgtcgggaggaggttcctcccagggctgggggagcctggagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cctttaactcctgattgcgtcgggaggaggttcctcccagggctgggggagcctggagca 549

                                                                       
Query: 241 ttttttatatgcggcaaccagatgttggagtccctgcggagagatggagcagggctccac 300
              |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggctggagatgcggcaaccagatgttggagtccctgcggagagatggagcagggctccac 489

                                                                       
Query: 301 cccaactctgaagcagccagagctgaggggtagcccactctctcaagaagagaaaaaggc 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 488 cccaactctgaagcagccagagctgaggggtagcccactctcgcaagaagagaaaaaggc 429

                                                                       
Query: 361 gctctgcagaatccagaggactagtataaccagttaccctctctccacgacttgtcgcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gctctgcagaatccagaggactagtataaccagttaccctctctccacgacttgtcgcct 369

                                                                       
Query: 421 acctcctcagcgggcggtggctagcttacagggcctcccgggatttccagggggtagtgg 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 368 acctcctcagcgggcggtggctagcttacagggccccccgggatttccagggggtagtgg 309

                                                                       
Query: 481 aaagcagttgcctgagtccatagccccgggcattctctctagggttcctaatacaacagc 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaagcagttgcctgagtccacagccccgggcattctctctagggttcctaatacaacagc 249

                                                           
Query: 541 cggtgatggccctaattgaagagcttgtctccgtggtacgtcctagac 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cggtgatggccctaattgaagagcttgtctccgtggtacgtcctagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no497_n03.g1 MSMg01no497_n03.g1 CHROMAT_FILE:
MSMg01no497_n03.g1 PHD_FILE: MSMg01no497_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:38 2005
         (630 letters)



>mm_chr5_75379841_75380870
          Length = 1030

 Score = 1158 bits (599), Expect = 0.0
 Identities = 622/630 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccactcattcgccccttaagggagcatagagctgctgaggctaccctgtgggcttttga 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tccactcattcgccccttaagggagcacagagctgctgaggctaccctgtgggcttttga 260

                                                                       
Query: 61  aatggacacagtcaaaaggcagagttctctttagaaatcaccatgaagtgaaaagatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggacacagtcaaaaggcagagttctctttagaaatcaccatgaagtgaaaagatggc 320

                                                                       
Query: 121 cacatcacttttggaacaagacctagatctttccttcacatatcagacttctaaatgcca 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 cacatcacttttggaacaagacctagatctttccttcacatatcggacttctaaatgcca 380

                                                                       
Query: 181 ttcgcccagcttgctgcccctgggacctcattcccacaggagggggtgtgggtttgaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcgcccagcttgctgcccctgggacctcattcccacaggagggggtgtgggtttgaggc 440

                                                                       
Query: 241 tgctattcggctaattcttaacagccctgtgcaggaatctaggaggaatgtgcgcagtgc 300
           |||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tgctagccggctaattcttaacagccctgtgcaggaatctagaaggaatgtgcgcagtgc 500

                                                                       
Query: 301 tcaatacaaagctcatttggcttcagggaccattttaattaaactaattatctctagaag 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tcaatacaaagctcatttggcttcagggaccattttaattaaattaattatctctagaag 560

                                                                       
Query: 361 aaacacttggagcttcttagggctaaacaataggtacttgttctcagttctaatacaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacacttggagcttcttagggctaaacaataggtacttgttctcagttctaatacaagt 620

                                                                       
Query: 421 ccgttgttcagagaatcctcttatgagctgaagacaatatctcaccagatacttaaaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccgttgttcagagaatcctcttatgagctgaagacaatatctcaccagatacttaaaaac 680

                                                                       
Query: 481 cacacactccgagtctaccttcaatgtctcctgctctgtcctgcactcagtggagagacg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacacactccgagtctaccttcaatgtctcctgctctgtcctgcactcagtggagagacg 740

                                                                       
Query: 541 tttacaaatagctgatagcccggcagaaaaatgcccgtgcaaacctacnaactccctccc 600
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 tttacaaatagctgatagcccggcagaaaaatgcccgtgcaaacctacaaactccctccc 800

                                         
Query: 601 acccttttctgttggtctgcctcatattcc 630
           ||||||||||||||||||||||| ||||||
Sbjct: 801 acccttttctgttggtctgcctcgtattcc 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)