BAC Information

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BAC

Clone NameMSMg01-497O02
Chromosome5 (Build37)
Map Location 136,755,032 - 136,755,344
singlet/doubletsinglet
Overlap geneCutl1
Upstream geneFkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2
Downstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497O02.T7 (MSMg01no497_o02.b1)MSMg01-497O02.TJ (MSMg01no497_o02.g1)
ACCAG574341AG574342
length760757
length of high quality
(start - end)
313 (328 - 640)236 (74 - 309)
definitionCHROMAT_FILE: MSMg01no497_o02.b1 PHD_FILE: MSMg01no497_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:43 2005CHROMAT_FILE: MSMg01no497_o02.g1 PHD_FILE: MSMg01no497_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCACCTGTTTCCTTTTTTATGTGGTTTTTTTTTTCTCTCTCTCTCGC
CCTGCAGCCTACATGAAGAGGCGACACAGCTCTGTCAGTGACAGTCAGCC
TTGTGAGCCCCCCTCTGTGGGTATTGACTATAGCCAAGGCGCCAGCCCCC
AGCCACAACACCAGCTGAAGAAACCTCGAGTGGTGCTGGCTCCAGAGGAG
AAGGAAGCGCTGAAGCGAGCATATCAGCAGAAGCCATACCCATCACCAAA
AACCATCGAGGAACTTGTTTTTTTATTCAACCTGAAGACCAGCACCGTCA
TCAACTGGTTCCATAATTACAGGTAAAGCCCTAGCAAGACTCCCAACAGC
AGGACCTATGAGAACCCACATGACCAAACACAGTGTAGCCTTGGCTCCTG
AAGGGAGACCCCAGGCCAAAGCATGCAGTGTGAACAGCTGGGGAAGGGCT
GGTGTCCCAGTGTGCATGTGCATGCTCAAAGTCAGAGGGACTCTCAGGAC
TCAATTCTCTCCAACCACCTTACAGGACCTTGGGATGGACACAGATGTCA
GGTCTGTGTGCACAGTGCCTCTGCCTGCTGGTTCACCTGGTGGTGCCATC
TTCATTTTAGACAGGATCTCACTTACTATGTAGCTTTGGCCTAGAATTTG
CTATGGAGACCAAACTGGCCTTGAAACCAGAGATCTGCCTACATCTACCT
CCCAAGTACG
CGATGCAGTGGGAGGCCAGGCGGCCGCCTGGTTTCTTACTTGGGGTGACC
TATAGAATTTTCAAAAAAGGGGAATAAAAAGTAAGCCAGGCCTCGCAGCT
CGCCCAGCACTTGGGACTCTGAGGCAGGAGGATTGCTGCAGATTTGAAGC
TGTCATCGATGACATAGTGAGATCCTGTCTCAACAACTGAAATTACAAAC
CAGGCTTGGTGGTGCATGTCTGCAATCCAGCAACTGGGATGTGGTTGTGG
GAGGATCAGTAGTTCCTGGAGTCCCTAAGACCCTCTTTCAAAAGAAAGAA
AGAGTCCAGGTGTTGTACTTTTTTCATCCCAACACTCAAGGTGAATCTCT
GTGAGTCTGAAGCCAGCCTGGTCTACAGAGCGAGTTCCAGGACAGCCAGT
GCTACATATTTTCACCCCATCTGGAAAACAAACAAAACAAAACAAAACAA
AACAGAAAGCTGATTTTTTAAAAATTTAATGTCTTTTCTTTAATTTTAAT
AATGTCTTTTTTTAAAAGATTTATTTTATTTATATGAGTACACTGTAGTT
GTTTCCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGT
GAGCCACCATGTGGTTGCTGGAAATTGAACTCAGAATCTTTGGTTATATT
ATCTATGCTCTTTAATGCTGAATCATCTCTCCAGCCCCAGAAAGTTTCTT
TTGAAAAAAGAAAAAAGTCGGGTGTGGTGGCGCTTTTCTTCTAGTTCTCG
TTAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_o02.b1 MSMg01no497_o02.b1 CHROMAT_FILE:
MSMg01no497_o02.b1 PHD_FILE: MSMg01no497_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:43 2005
         (313 letters)



>mm_chr5_136754832_136755544
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacctgaagaccagcaccgtcatcaactggttccataattacaggtaaagccctagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 caacctgaagaccagcaccgtcatcaactggttccataattacaggtaaagccctagcaa 454

                                                                       
Query: 61  gactcccaacagcaggacctatgagaacccacatgaccaaacacagtgtagccttggctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gactcccaacagcaggacctatgagaacccacatgaccaaacacagtgtagccttggctc 394

                                                                       
Query: 121 ctgaagggagaccccaggccaaagcatgcagtgtgaacagctggggaagggctggtgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctgaagggagaccccaggccaaagcatgcagtgtgaacagctggggaagggctggtgtcc 334

                                                                       
Query: 181 cagtgtgcatgtgcatgctcaaagtcagagggactctcaggactcaattctctccaacca 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cagtgtgcatgtgcatgctcgaagtcagagggactctcaggactcaattctctccaacca 274

                                                                       
Query: 241 ccttacaggaccttgggatggacacagatgtcaggtctgtgtgcacagtgcctctgcctg 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccttataggaccttgggatggacacagatgtcaggtctgtgtgcacagtgcctctgcctg 214

                        
Query: 301 ctggttcacctgg 313
           |||||||||||||
Sbjct: 213 ctggttcacctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)