Query= MSMg01no497_o18.b1 MSMg01no497_o18.b1 CHROMAT_FILE:
MSMg01no497_o18.b1 PHD_FILE: MSMg01no497_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:46 2005
(499 letters)
>mm_chr5_89783601_89784499
Length = 899
Score = 870 bits (450), Expect = 0.0
Identities = 486/500 (97%), Gaps = 5/500 (1%)
Strand = Plus / Plus
Query: 3 ccttgaaaattctgtcaaatctcaattccctaaacctagtatttgccacatacagagaca 62
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 203 ccttgaaaattctgtcaaatctcaattccctaaacctagtatctgccacatacagagaca 262
Query: 63 ttaggcattttattctgttcttctctgtatcacttgagtgggcatgttttacccagcttc 122
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 263 ttaggcattttattctgttcttctctgtatcacttgagtgggcgtgttttacacagcttc 322
Query: 123 ccatcactacttattaggcatcatgttggttgtggtggatgctcttccatatcctaaaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 323 ccatcactacttattaggcatcatgttggttgtggtggatgctcttccatagcctaaaca 382
Query: 183 gatagagttgtaacatttgtccctgctgtcggcctttcccaattgtcttctttgc---tt 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 383 gatagagttgtaacatttgtccctgctgtaggcctttcccaattgtcttctttgcccat- 441
Query: 240 tatactggtgttgtggatagccctgggctaattatattcgatgttaattccattctcctg 299
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 -acactggtgttgtggatagccctgggctaattatattcgatgttaattccattctcctg 500
Query: 300 tgagaagctgcaaacaaggaatgagtcagcactcaggtgatttcctgtaaacctgcttcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagaagctgcaaacaaggaatgagtcagcactcaggtgatttcctgtaaacctgcttcc 560
Query: 360 caccttaatttgtgaaataaaagagagcagatgattgggcagataaaagggaaggtggag 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caccttaatttgtaaaataaaagagagcagatgattgggcagataaaagggaaggtggag 620
Query: 420 tggaaggagaggggtgagaagagaaaattggaattgagagaggacgcataagaggaggag 479
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 621 tggaaggagaggggtgagaagagaaaattggaattgagagaggacacaaaagaggaggag 680
Query: 480 gtaaaagaaaagtggagcag 499
||||||||||||||||||||
Sbjct: 681 gtaaaagaaaagtggagcag 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_o18.g1 MSMg01no497_o18.g1 CHROMAT_FILE:
MSMg01no497_o18.g1 PHD_FILE: MSMg01no497_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:46 2005
(229 letters)
>mm_chr5_89955054_89955682
Length = 629
Score = 366 bits (189), Expect = e-106
Identities = 214/229 (93%), Gaps = 13/229 (5%)
Strand = Plus / Minus
Query: 1 tccatccacaaggcaccacggcttttgtgcaagatcatgggggtggcgtttcaatcacac 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tccatccacaaagcaccacggcttttgtgcaagatcatgggggtggcgtttcaatcacac 246
Query: 61 tagaggctgccagtaaaggaatacttggttggggagtaatagtcttctctctctctctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagaggctgccagtaaaggaatacttggttggggagtaatagtcttctctctctctctct 186
Query: 121 ctctctctctctctctctctctctctctctctctctctctctctctctctctagtcctcc 180
||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 185 ctctctctctctctctctctctctctctctctctctctc-----------c-agtcctcc 138
Query: 181 cttcctccctccctctttgccccccccaccgctctctctttgcatgccc 229
||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 137 cttcctccctccctctttg-cccccccatcgctctctctttgcatgccc 90
Score = 70.3 bits (36), Expect = 9e-17
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 105 ttctctctctctctctctctctctctctctctctctctct 144
|||||| |||||||||||||||||||||||||||||||||
Sbjct: 40 ttctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 134 tctctctctctctctctctctctctctctctctctctct 172
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 132 tctctctctctctctctctctctctctctctctctctct 170
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 130 tctctctctctctctctctctctctctctctctctctct 168
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 128 tctctctctctctctctctctctctctctctctctctct 166
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 126 tctctctctctctctctctctctctctctctctctctct 164
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 124 tctctctctctctctctctctctctctctctctctctct 162
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 122 tctctctctctctctctctctctctctctctctctctct 160
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 120 tctctctctctctctctctctctctctctctctctctct 158
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 118 tctctctctctctctctctctctctctctctctctctct 156
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 116 tctctctctctctctctctctctctctctctctctctct 154
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 114 tctctctctctctctctctctctctctctctctctctct 152
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 112 tctctctctctctctctctctctctctctctctctctct 150
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 110 tctctctctctctctctctctctctctctctctctctct 148
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Score = 68.4 bits (35), Expect = 4e-16
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 108 tctctctctctctctctctctctctctctctctctctct 146
||||| |||||||||||||||||||||||||||||||||
Sbjct: 39 tctctttctctctctctctctctctctctctctctctct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 160
Number of extensions: 55
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 17
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space: 136400
Effective search space used: 136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
